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CAZyme Information: PHPALM_2009-t46_1-p1

You are here: Home > Sequence: PHPALM_2009-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_2009-t46_1-p1
CAZy Family GH28
CAZyme Description Hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
156 17019.06 5.9718
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_2009-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 15 155 2.4e-34 0.5551020408163265

CDD Domains      help

PHPALM_2009-t46_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.43e-86 8 154 6 153
3.70e-85 8 154 6 153
1.39e-76 1 154 1 153
2.51e-76 1 154 20 172
3.95e-76 1 154 1 153

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.26e-08 73 155 50 135
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHPALM_2009-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000266 0.999723 CS pos: 22-23. Pr: 0.6207

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_2009-t46_1-p1.