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CAZyme Information: PHPALM_1996-t46_1-p1

You are here: Home > Sequence: PHPALM_1996-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_1996-t46_1-p1
CAZy Family GH28
CAZyme Description Hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
461 49272.14 5.1122
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 123 240 2.4e-45 0.5935828877005348
PL1 239 329 5.7e-33 0.47593582887700536

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 3.80e-29 123 331 3 190
Amb_all domain.
226384 PelB 3.20e-11 97 334 51 280
Pectate lyase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.40e-196 1 461 1 441
9.74e-196 1 461 1 441
1.13e-189 1 344 1 330
4.26e-182 8 397 8 384
6.04e-182 8 397 8 384

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.69e-70 24 378 4 329
Pectin Lyase B [Aspergillus niger]
8.19e-69 25 372 5 322
Pectin Lyase A [Aspergillus niger]
1.92e-66 25 372 5 322
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.85e-89 8 401 8 384
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
2.85e-89 8 401 8 384
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
2.62e-84 1 373 1 343
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
2.58e-83 8 388 7 357
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
2.58e-83 8 388 7 357
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000218 0.999753 CS pos: 21-22. Pr: 0.9750

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_1996-t46_1-p1.