CAZyme Information: PHPALM_18434-t46_1-p1

Basic Information

• Species: Phytophthora palmivora
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
• CAZyme ID: PHPALM_18434-t46_1-p1
• CAZy Family: GH16
• CAZyme Description: Choline dehydrogenase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
563		63030.24	6.9934

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9	28185	N/A	3511	24674

• Gene Location: location=NCKW01009908:31-1786(+)

Full Sequence      

ALSSAASAEYDYVIVGGGSAGCVLANRLTEDPNNKVLLVETGPDDRTKWDSWKIHMPAAL
TYNLANDKYNWYYHTEPQKHLNGRRLPWPRGRVLGGSSSLNAMVYIRGHAYDYDDWQESG
ADGWSYADCLPYFRKAQNHELGPDDYRGGDGPLHVIRGNQKDQILFKKFIDAGVQAGYPF
TDDMNGYQQEGFGWMDMTVWKGFRWSTASAYLRPAMKRPNLTVVTDTFVSKVVFEGKKAV
GVETEDHKKKTTTQIRAAKEVILSGGAINSPQLLMLSGIGDADHLKEVGVPVVQHLPAVG
QNMEDHLDLYIQYMCKKPITLHNATWKYPHKMVAIGLEWIFRRTGMGASAHLESGGFIRS
APGKRHPDLQYHFLPGSLTGQLTPGAYHAMQAHCSPMRAQSRGWLKLRSNNPHEHPIIEP
NYLSVEQDLIDMRAGVKLTREILEQQTLDEYRGDPISPSKDVQTDAQIDEWIREHTESAY
HPSCTNRMGVDENTVVDPQTRVHGIENLRVVDASIMPNIVSGNLNAPTIMIAEKAADIIL
GKTPLPKSTAPVYQPKNWETSQR

Enzyme Prediction     

No EC number prediction in PHPALM_18434-t46_1-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	9	540	4.7e-173	0.9929577464788732

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225186	BetA	0.0	3	545	1	539	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000	PRK02106	0.0	6	563	2	555	choline dehydrogenase; Validated
366272	GMC_oxred_N	6.40e-67	82	308	15	218	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739	GMC_oxred_C	3.83e-44	400	535	2	143	GMC oxidoreductase. This domain found associated with pfam00732.
215420	PLN02785	3.41e-27	1	531	47	568	Protein HOTHEAD

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ28087.1|AA3_2	0.0	4	563	22	581
CAB3230510.1|AA3_2	2.58e-246	4	562	19	578
ANI26486.1|AA3_2	3.12e-239	9	562	70	624
AWP09430.1|AA3_2	9.14e-236	9	555	19	566
CEF60566.1|AA3_2	3.60e-199	12	545	35	574

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6ZH7_A	1.37e-94	3	550	1	571	Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YRU_AAA	1.92e-94	3	550	1	571	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YS1_AAA	2.70e-94	3	550	1	571	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
5NCC_A	2.92e-94	3	550	17	587	Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]
6YS2_AAA	3.80e-94	3	550	1	571	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q6UPE0|CHDH_RAT	1.19e-247	1	562	34	599	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
sp|Q8NE62|CHDH_HUMAN	2.90e-242	1	562	29	594	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
sp|Q8BJ64|CHDH_MOUSE	8.90e-242	1	562	34	596	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
sp|C3K3D3|BETA_PSEFS	5.24e-199	7	553	2	547	Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=betA PE=3 SV=1
sp|Q48CM7|BETA_PSE14	5.42e-199	9	553	6	549	Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000006	0.000045

TMHMM  Annotations     

There is no transmembrane helices in PHPALM_18434-t46_1-p1.