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CAZyme Information: PHPALM_17895-t46_1-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora palmivora | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora | |||||||||||
| CAZyme ID | PHPALM_17895-t46_1-p1 | |||||||||||
| CAZy Family | GH16 | |||||||||||
| CAZyme Description | Pectate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL3 | 582 | 778 | 9.3e-78 | 0.9948453608247423 |
| PL3 | 233 | 428 | 1.1e-74 | 0.9845360824742269 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 397360 | Pectate_lyase | 5.26e-83 | 577 | 782 | 2 | 199 | Pectate lyase. |
| 397360 | Pectate_lyase | 1.67e-80 | 228 | 430 | 2 | 195 | Pectate lyase. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 4.68e-149 | 574 | 819 | 21 | 266 | |
| 1.59e-104 | 574 | 803 | 31 | 258 | |
| 7.45e-100 | 574 | 803 | 31 | 258 | |
| 5.06e-88 | 574 | 805 | 23 | 275 | |
| 5.06e-88 | 574 | 805 | 23 | 275 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.21e-23 | 245 | 372 | 11 | 135 | Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15] |
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| 5.38e-22 | 606 | 803 | 8 | 223 | Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi] |
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| 5.10e-21 | 606 | 803 | 126 | 341 | Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi] |
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| 2.19e-19 | 581 | 722 | 2 | 138 | The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725] |
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| 2.25e-19 | 581 | 722 | 3 | 139 | The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii],3T9G_B The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.90e-55 | 231 | 450 | 35 | 248 | Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1 |
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| 4.65e-55 | 231 | 450 | 22 | 236 | Probable pectate lyase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyD PE=3 SV=1 |
|
| 4.33e-54 | 231 | 450 | 23 | 237 | Probable pectate lyase D OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyD PE=3 SV=1 |
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| 4.33e-54 | 231 | 450 | 23 | 237 | Probable pectate lyase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyD PE=3 SV=1 |
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| 1.77e-53 | 231 | 450 | 28 | 241 | Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000315 | 0.999670 | CS pos: 24-25. Pr: 0.9773 |