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CAZyme Information: PHPALM_16197-t46_1-p1

You are here: Home > Sequence: PHPALM_16197-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_16197-t46_1-p1
CAZy Family GH1
CAZyme Description Choline dehydrogenase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
300 33601.01 6.8323
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_16197-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 5 297 3e-91 0.5369718309859155

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 2.55e-165 1 300 50 345
choline dehydrogenase; Validated
225186 BetA 1.53e-106 1 300 49 349
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
366272 GMC_oxred_N 8.64e-62 27 253 15 217
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
274888 Rv0697 3.15e-52 28 252 73 291
dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.
215420 PLN02785 1.64e-18 35 265 127 340
Protein HOTHEAD

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
9.15e-162 1 300 74 372
5.01e-124 1 298 74 365
1.51e-122 1 300 120 413
1.43e-119 1 300 69 362
8.96e-110 1 300 78 379

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.70e-45 14 265 56 306
Crystal structure of pyridoxine 4-oxidase - pyridoxamine complex [Mesorhizobium loti]
7.50e-45 14 265 72 322
Crystal structure of pyridoxine 4-oxidase from Mesorbium loti [Mesorhizobium loti]
7.40e-42 1 251 50 305
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
7.40e-42 1 251 50 305
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
7.40e-42 1 251 50 305
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.94e-119 1 299 92 384
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
1.49e-118 1 299 90 382
Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
2.18e-116 1 299 95 387
Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
6.49e-99 1 300 49 347
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=betA PE=3 SV=1
1.83e-98 1 300 49 347
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000040 0.000009

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_16197-t46_1-p1.