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CAZyme Information: PHPALM_1579-t46_1-p1

You are here: Home > Sequence: PHPALM_1579-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_1579-t46_1-p1
CAZy Family CE8
CAZyme Description Carbohydrate-binding protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
325 34732.78 9.7187
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.99.18:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 3 320 3.3e-57 0.5967153284671532

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 3.82e-17 4 323 215 534
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 2.23e-10 3 135 212 327
choline dehydrogenase; Validated
366272 GMC_oxred_N 8.98e-09 6 99 141 215
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
215420 PLN02785 1.76e-07 6 110 234 339
Protein HOTHEAD
398739 GMC_oxred_C 1.46e-05 210 315 24 140
GMC oxidoreductase. This domain found associated with pfam00732.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.07e-144 1 322 229 548
2.32e-73 4 315 231 540
1.50e-71 4 304 229 526
1.01e-67 3 315 230 540
1.62e-66 4 315 233 542

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.02e-07 4 319 429 760
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]
5.47e-07 4 325 203 533
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
5.49e-07 4 325 208 538
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
1.68e-06 5 73 207 281
Almond hydroxynitrile lyase in complex with benzaldehyde [Prunus dulcis],3GDN_B Almond hydroxynitrile lyase in complex with benzaldehyde [Prunus dulcis],3GDP_A Hydroxynitrile lyase from almond, monoclinic crystal form [Prunus dulcis],3GDP_B Hydroxynitrile lyase from almond, monoclinic crystal form [Prunus dulcis]
1.70e-06 5 73 207 281
Crystal structure of the hydroxynitrile lyase from almond [Prunus dulcis],1JU2_B Crystal structure of the hydroxynitrile lyase from almond [Prunus dulcis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.04e-06 1 73 285 359
Ecdysone oxidase OS=Drosophila melanogaster OX=7227 GN=Eo PE=1 SV=2
3.21e-06 4 325 435 765
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
8.95e-06 5 73 234 308
(R)-mandelonitrile lyase 2 OS=Prunus dulcis OX=3755 GN=MDL2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000039 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_1579-t46_1-p1.