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CAZyme Information: PHPALM_15000-t46_1-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora palmivora | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora | |||||||||||
| CAZyme ID | PHPALM_15000-t46_1-p1 | |||||||||||
| CAZy Family | CBM9 | |||||||||||
| CAZyme Description | GTP-binding protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 2.4.1.131:1 |
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CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 340835 | GT4_ALG11-like | 1.62e-104 | 2 | 277 | 141 | 419 | alpha-1,2-mannosyltransferase ALG11 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| 227583 | GTPBP1 | 1.95e-92 | 343 | 824 | 7 | 496 | GTPase [General function prediction only]. |
| 215511 | PLN02949 | 3.95e-83 | 2 | 282 | 172 | 454 | transferase, transferring glycosyl groups |
| 206728 | GTPBP1_like | 3.95e-63 | 455 | 685 | 1 | 223 | GTP binding protein 1 (GTPBP1)-like family includes GTPBP2. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM. |
| 406369 | ALG11_N | 2.58e-28 | 1 | 70 | 140 | 208 | ALG11 mannosyltransferase N-terminus. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 7.12e-99 | 1 | 283 | 198 | 480 | |
| 8.33e-68 | 1 | 281 | 199 | 478 | |
| 8.33e-68 | 1 | 281 | 199 | 478 | |
| 1.33e-63 | 2 | 284 | 72 | 359 | |
| 3.46e-63 | 2 | 282 | 73 | 358 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.99e-10 | 547 | 733 | 75 | 236 | Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp [Methanococcus maripaludis],4AC9_B Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp [Methanococcus maripaludis],4AC9_C Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp [Methanococcus maripaludis],4AC9_D Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp [Methanococcus maripaludis],4ACA_A Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis, Apo Form [Methanococcus maripaludis],4ACA_B Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis, Apo Form [Methanococcus maripaludis],4ACA_C Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis, Apo Form [Methanococcus maripaludis],4ACA_D Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis, Apo Form [Methanococcus maripaludis],4ACB_A Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With The Gtp Analogue Gppnhp [Methanococcus maripaludis],4ACB_B Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With The Gtp Analogue Gppnhp [Methanococcus maripaludis],4ACB_C Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With The Gtp Analogue Gppnhp [Methanococcus maripaludis],4ACB_D Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With The Gtp Analogue Gppnhp [Methanococcus maripaludis] |
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| 5.86e-09 | 454 | 729 | 13 | 246 | Structure of Tse6 in complex with EF-Tu [Pseudomonas aeruginosa PAO1],4ZV4_B Structure of Tse6 in complex with EF-Tu [Pseudomonas aeruginosa PAO1] |
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| 2.89e-07 | 454 | 783 | 13 | 312 | Crystal structure of an ancient sequence-reconstructed Elongation Factor Tu (node 262) [synthetic construct] |
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| 6.52e-07 | 454 | 729 | 5 | 239 | Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168 [Thermotoga neapolitana DSM 4359],5W75_B Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168 [Thermotoga neapolitana DSM 4359],5W75_C Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168 [Thermotoga neapolitana DSM 4359],5W75_D Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168 [Thermotoga neapolitana DSM 4359] |
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| 7.29e-07 | 546 | 798 | 84 | 345 | Crystal structure of a complex of the archaeal ribosomal stalk protein aP1 and the GDP-bound archaeal elongation factor aEF1alpha [Pyrococcus horikoshii OT3],3WY9_B Crystal structure of a complex of the archaeal ribosomal stalk protein aP1 and the GDP-bound archaeal elongation factor aEF1alpha [Pyrococcus horikoshii OT3],3WYA_A Crystal structure of GDP-bound EF1alpha from Pyrococcus horikoshii [Pyrococcus horikoshii OT3],7CSL_A Chain A, Elongation factor 1-alpha [Pyrococcus horikoshii OT3],7CSL_B Chain B, Elongation factor 1-alpha [Pyrococcus horikoshii OT3] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6.52e-78 | 340 | 815 | 56 | 545 | GTP-binding protein 2 OS=Mus musculus OX=10090 GN=Gtpbp2 PE=1 SV=1 |
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| 1.22e-77 | 340 | 815 | 56 | 545 | GTP-binding protein 2 OS=Homo sapiens OX=9606 GN=GTPBP2 PE=1 SV=1 |
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| 2.59e-68 | 358 | 809 | 67 | 528 | GTP-binding protein 1 OS=Homo sapiens OX=9606 GN=GTPBP1 PE=1 SV=3 |
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| 2.59e-68 | 358 | 809 | 67 | 528 | GTP-binding protein 1 OS=Bos taurus OX=9913 GN=GTPBP1 PE=2 SV=2 |
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| 2.93e-68 | 361 | 809 | 3 | 461 | GTP-binding protein 1 (Fragment) OS=Pongo abelii OX=9601 GN=GTPBP1 PE=2 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000007 | 0.000008 |
