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CAZyme Information: PHPALM_13142-t46_1-p1

You are here: Home > Sequence: PHPALM_13142-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_13142-t46_1-p1
CAZy Family AA17
CAZyme Description Flavodoxin/amb allergen/Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
369 39442.52 9.7126
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 93 286 3.6e-81 0.9893048128342246

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 6.42e-23 91 287 2 189
Amb_all domain.
226384 PelB 4.08e-04 43 293 57 282
Pectate lyase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.66e-228 1 369 1 400
3.64e-205 42 369 133 491
2.94e-194 1 369 1 400
6.88e-193 1 369 1 400
1.14e-138 1 368 1 409

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.67e-84 25 346 5 339
Pectin Lyase A [Aspergillus niger]
8.44e-82 24 350 4 344
Pectin Lyase B [Aspergillus niger]
2.67e-80 25 346 5 339
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.25e-91 25 346 24 358
Probable pectin lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelB PE=3 SV=2
1.49e-89 16 364 13 376
Probable pectin lyase A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=pelA PE=3 SV=1
1.73e-88 1 364 1 377
Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1
1.84e-88 25 368 26 383
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
1.84e-88 25 368 26 383
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000221 0.999740 CS pos: 21-22. Pr: 0.9783

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_13142-t46_1-p1.