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CAZyme Information: PHPALM_13061-t46_1-p1

You are here: Home > Sequence: PHPALM_13061-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_13061-t46_1-p1
CAZy Family AA17
CAZyme Description Choline dehydrogenase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
656 72294.34 8.5975
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC - -

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 292 621 3.6e-95 0.596830985915493

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 1.01e-160 291 621 26 351
choline dehydrogenase; Validated
235000 PRK02106 1.46e-123 1 290 230 544
choline dehydrogenase; Validated
225186 BetA 1.34e-101 288 620 24 353
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
225186 BetA 1.75e-67 1 283 232 539
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
366272 GMC_oxred_N 1.96e-57 343 567 15 216
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
9.10e-159 292 621 49 378
3.55e-127 292 621 46 373
2.84e-121 292 621 41 368
2.50e-120 292 621 92 419
3.35e-105 292 621 55 385

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.07e-47 292 580 23 306
Crystal structure of pyridoxine 4-oxidase - pyridoxamine complex [Mesorhizobium loti]
1.48e-47 292 580 39 322
Crystal structure of pyridoxine 4-oxidase from Mesorbium loti [Mesorhizobium loti]
1.87e-42 269 621 3 364
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
1.87e-42 269 621 3 364
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
1.87e-42 269 621 3 364
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.08e-127 292 621 64 391
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
2.60e-126 292 621 67 394
Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
6.66e-122 292 621 62 389
Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
6.69e-98 292 621 24 351
Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B) OX=316385 GN=betA PE=3 SV=1
6.69e-98 292 621 24 351
Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain K12) OX=83333 GN=betA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000052 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_13061-t46_1-p1.