dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: PHPALM_1277-t46_1-p1

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Basic Information help

Species

Phytophthora palmivora

Lineage

Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora

CAZyme ID

PHPALM_1277-t46_1-p1

CAZy Family

AA17

CAZyme Description

Glycoside hydrolase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
448		47439.25	4.3255

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9	28185	N/A	3511	24674

Gene Location

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in PHPALM_1277-t46_1-p1.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH6	40	295	1.1e-56	0.9421768707482994

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
396075	Glyco_hydro_6	5.40e-43	45	299	2	293	Glycosyl hydrolases family 6.
227616	CelA1	1.08e-17	33	306	130	401	Cellulase/cellobiase CelA1 [Carbohydrate transport and metabolism].

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start
3.94e-138	4	341	1	344
1.25e-91	1	326	1	332
1.29e-81	26	323	22	321
1.23e-77	27	329	21	331
1.26e-74	28	318	18	301

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
5.88e-28	60	311	44	314	GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],5JX5_B GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],5JX5_C GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],5JX5_D GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],6IDW_A GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],6IDW_B GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],6IDW_C GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],6IDW_D GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102]
1.24e-25	91	296	70	270	CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF A THERMOPHILIC ENDOCELLULASE [Thermobifida fusca],2BOD_X Catalytic domain of endo-1,4-glucanase Cel6A from Thermobifida fusca in complex with methyl cellobiosyl-4-thio-beta-cellobioside [Thermobifida fusca]
2.14e-24	91	296	70	270	Catalytic domain of endo-1,4-glucanase Cel6A mutant Y73S from Thermobifida fusca [Thermobifida fusca],2BOF_X Catalytic domain of endo-1,4-glucanase Cel6A mutant Y73S from Thermobifida fusca in complex with cellotetrose [Thermobifida fusca],2BOG_X Catalytic domain of endo-1,4-glucanase Cel6A mutant Y73S from Thermobifida fusca in complex with methyl cellobiosyl-4-thio-beta- cellobioside [Thermobifida fusca]
1.28e-21	91	306	73	283	Structure of the endoglucanase Cel6 from Mycobacterium tuberculosis in complex with cellobiose at 1.75 angstrom [Mycobacterium tuberculosis H37Rv]
1.28e-21	91	306	73	283	Structure of the endoglucanase Cel6 from Mycobacterium tuberculosis in complex with METHYL-CELLOBIOSYL-4-DEOXY-4-THIO-BETA-D-CELLOBIOSIDE at 1.6 angstrom [Mycobacterium tuberculosis H37Rv]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
4.88e-24	62	292	75	301	Endoglucanase A OS=Thermobispora bispora OX=2006 GN=celA PE=3 SV=1
5.79e-24	91	296	101	301	Endoglucanase E-2 OS=Thermobifida fusca OX=2021 GN=celB PE=1 SV=2
2.35e-22	91	306	238	438	Endoglucanase A OS=Cellulomonas fimi OX=1708 GN=cenA PE=1 SV=1
1.96e-19	91	305	106	350	Probable exoglucanase GH6D OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) OX=515849 GN=GH6D PE=3 SV=1
1.16e-18	60	296	113	343	Endoglucanase 1 OS=Streptomyces sp. (strain KSM-9) OX=74575 GN=casA PE=1 SV=3

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000255	0.999732	CS pos: 26-27. Pr: 0.9668

TMHMM Annotations help

There is no transmembrane helices in PHPALM_1277-t46_1-p1.