logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHPALM_12309-t46_1-p1

You are here: Home > Sequence: PHPALM_12309-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_12309-t46_1-p1
CAZy Family AA17
CAZyme Description Hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
605 62700.59 3.9084
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC - -

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 16 280 4.7e-74 0.9551020408163265
AA17 314 580 1.4e-71 0.9469387755102041

CDD Domains      help

PHPALM_12309-t46_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.43e-130 1 215 1 215
6.93e-130 1 214 1 214
1.44e-129 1 250 1 252
3.26e-128 1 250 1 252
4.45e-128 301 512 1 212

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.18e-11 24 196 1 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHPALM_12309-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000337 0.999631 CS pos: 23-24. Pr: 0.9781

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_12309-t46_1-p1.