logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHPALM_11554-t46_1-p1

You are here: Home > Sequence: PHPALM_11554-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_11554-t46_1-p1
CAZy Family AA17
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
293 NCKW01006404|CGC1 30686.71 5.3264
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_11554-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 10 269 4.2e-63 0.9346938775510204

CDD Domains      help

PHPALM_11554-t46_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.11e-115 1 204 1 205
4.43e-114 1 204 1 205
1.55e-113 9 204 10 205
4.89e-113 9 204 10 205
5.33e-113 9 204 26 221

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.41e-13 22 193 1 174
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHPALM_11554-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000226 0.999746 CS pos: 21-22. Pr: 0.9816

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_11554-t46_1-p1.