CAZyme Information: PHPALM_11303-t46_1-p1

Basic Information

• Species: Phytophthora palmivora
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
• CAZyme ID: PHPALM_11303-t46_1-p1
• CAZy Family: AA17
• CAZyme Description: Glycosyl hydrolase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
779		85241.94	4.5734

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9	28185	N/A	3511	24674

• Gene Location: location=NCKW01006374:1652-3991(+)

Full Sequence      

MLKSWFSAVCCLAMGLAAHESTPFVSADEWDAQTDVIIESMDEDQLVGQMVQVAFSRFFN
KDKTFDEDKFRAYAKLKIGSYLSGPWQSGSYNGKYAWTAQEWRDVLSRAQEIVKEENDGH
PFIFGIDSLHGAGFTSGAVLFGQPINGAATFNPDLAYEMGRIAGRDTLAAGTPWIFGPML
EISQNPLWPRVYETFGEDPYLVSVISESLIKGIQSNNGSAACMKHWIGYSKTPTGHDKDA
VTLSDYELLNHFLPPFKAAVDAGVLSAMENYISVNGIPTIANNKLMNKLLRDDLGFEGMT
VSDFAEIEHLNTFHRFARTDEEAATLSIKRTSIDMTMASSDYGFINATKALIANDPSFLN
RVKQSARRVIKLKLQLGLYDNAVPGADLVDKVGSDEDKTAALNSARESIVLLQNNDSVLP
IPETAKVFLTGHSADNVGYQCGGWTLSQQGYSGNDMFPNGISVKDGFQAISNETVTYFNG
LNYTGTYNESDLSQAKELASKAEYTIAVIGEHSYTEKTYGDINDLALPAGQIKYVTELAS
TGTKVIVVLVGGRPRLLGELPSNVHAVINAMLPCELGGQAIAEIIYGRVNPSGRMPITYP
KDAGNILMPYNHLVSTQCASGDYCEMQWDFGHGLSYTEFSYSDMTVSRTNVTSITETIDV
SVVVTNSGSVDGKETVMLFLTQPFRTISVPEVKQLKKFTKVDLKAGESTTVKFTLSADDW
SVYYPQIGSGLKKVAEDADYVIAIKPETDCDVYNETAVANPLCSTFTLQTGEHPYGSFE

Enzyme Prediction     

EC	3.2.1.21:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	115	337	3.5e-58	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
185053	PRK15098	3.26e-110	121	744	105	750	beta-glucosidase BglX.
224389	BglX	4.31e-63	44	454	4	381	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
178629	PLN03080	6.26e-61	121	715	83	742	Probable beta-xylosidase; Provisional
395747	Glyco_hydro_3	1.38e-50	44	372	3	316	Glycosyl hydrolase family 3 N terminal domain.
396478	Glyco_hydro_3_C	2.85e-47	409	636	1	216	Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ29009.1|GH3	7.53e-315	1	768	1	762
UIZ29613.1|GH3	3.81e-285	1	774	46	825
UIZ29432.1|GH3	6.26e-285	1	774	1	769
UIZ27116.1|GH3	1.88e-280	50	769	1	725
CCA27737.1|GH3	3.89e-276	32	768	66	808

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JP0_A	1.01e-113	75	719	65	718	Bacteroides ovatus Xyloglucan PUL GH3B with bound glucose [Bacteroides ovatus],5JP0_B Bacteroides ovatus Xyloglucan PUL GH3B with bound glucose [Bacteroides ovatus]
5XXL_A	1.75e-81	26	744	6	737	Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482],5XXL_B Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482],5XXM_A Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with gluconolactone [Bacteroides thetaiotaomicron VPI-5482],5XXM_B Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with gluconolactone [Bacteroides thetaiotaomicron VPI-5482]
5XXN_A	8.96e-81	26	744	6	737	Crystal Structure of mutant (D286N) beta-glucosidase from Bacteroides thetaiotaomicron in complex with sophorose [Bacteroides thetaiotaomicron VPI-5482],5XXN_B Crystal Structure of mutant (D286N) beta-glucosidase from Bacteroides thetaiotaomicron in complex with sophorose [Bacteroides thetaiotaomicron VPI-5482],5XXO_A Crystal structure of mutant (D286N) GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with sophorotriose [Bacteroides thetaiotaomicron VPI-5482],5XXO_B Crystal structure of mutant (D286N) GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with sophorotriose [Bacteroides thetaiotaomicron VPI-5482]
7EAP_A	3.64e-80	104	722	79	726	Chain A, Fn3_like domain-containing protein [Aspergillus oryzae RIB40]
5YOT_A	5.04e-80	104	722	79	726	Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose [Aspergillus oryzae RIB40],5YOT_B Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose [Aspergillus oryzae RIB40],5YQS_A Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose [Aspergillus oryzae RIB40],5YQS_B Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose [Aspergillus oryzae RIB40]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q23892|GLUA_DICDI	3.68e-132	19	744	67	811	Lysosomal beta glucosidase OS=Dictyostelium discoideum OX=44689 GN=gluA PE=1 SV=2
sp|A7LXU3|BGH3B_BACO1	7.36e-113	75	719	87	740	Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153) OX=411476 GN=BACOVA_02659 PE=1 SV=1
sp|T2KMH0|PLH24_FORAG	5.85e-79	105	751	50	713	Beta-xylosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22130 PE=1 SV=1
sp|Q56078|BGLX_SALTY	1.74e-76	103	718	87	728	Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=bglX PE=3 SV=2
sp|P33363|BGLX_ECOLI	1.68e-75	103	718	87	728	Periplasmic beta-glucosidase OS=Escherichia coli (strain K12) OX=83333 GN=bglX PE=3 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.001419	0.998540	CS pos: 27-28. Pr: 0.2957

TMHMM  Annotations     

There is no transmembrane helices in PHPALM_11303-t46_1-p1.