logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: P170DRAFT_442161-t37_1-p1

You are here: Home > Sequence: P170DRAFT_442161-t37_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus steynii
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus steynii
CAZyme ID P170DRAFT_442161-t37_1-p1
CAZy Family GH38
CAZyme Description putative rhamnogalacturonase A
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
421 MSFO01000001|CGC33 47092.45 4.6334
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AsteyniiIBT23096 13430 1392250 235 13195
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in P170DRAFT_442161-t37_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 35 413 1.2e-73 0.9692307692307692

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 3.58e-25 109 419 55 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 3.03e-20 37 396 80 394
Probable polygalacturonase
215120 PLN02188 6.05e-20 108 414 126 392
polygalacturonase/glycoside hydrolase family protein
177865 PLN02218 8.74e-20 67 414 127 420
polygalacturonase ADPG
215540 PLN03010 5.51e-16 40 413 85 390
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.72e-255 15 420 31 436
1.72e-255 15 420 31 436
1.72e-255 15 420 31 436
9.92e-255 15 420 31 436
5.73e-254 15 420 31 436

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.01e-22 25 419 30 382
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
2.89e-08 80 391 45 326
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.05e-256 15 420 31 436
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
3.05e-256 15 420 31 436
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
4.54e-249 9 420 26 437
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
1.30e-248 9 420 26 437
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
3.37e-66 9 406 24 400
Putative galacturan 1,4-alpha-galacturonidase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxC PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000041 0.000002

TMHMM  Annotations      help

There is no transmembrane helices in P170DRAFT_442161-t37_1-p1.