logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: OAG24704.1

You are here: Home > Sequence: OAG24704.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Alternaria alternata
Lineage Ascomycota; Dothideomycetes; ; Pleosporaceae; Alternaria; Alternaria alternata
CAZyme ID OAG24704.1
CAZy Family GT2
CAZyme Description polygalacturonase precursor
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
383 KV441471|CGC6 40125.31 4.6554
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AalternataSRC1lrK2f 13577 N/A 111 13466
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:14 3.1.1.11:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 42 365 1.6e-67 0.9446153846153846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.27e-96 48 374 1 318
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 7.46e-25 48 368 80 406
Probable polygalacturonase
177865 PLN02218 2.36e-24 84 362 142 411
polygalacturonase ADPG
227721 Pgu1 1.17e-17 86 383 185 481
Polygalacturonase [Carbohydrate transport and metabolism].
165802 PLN02155 2.39e-17 168 360 168 364
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.93e-220 20 382 110 472
2.43e-204 1 383 1 383
1.22e-169 33 382 73 443
3.95e-152 12 378 14 375
2.84e-140 46 369 4 328

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.29e-118 31 372 1 344
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]
1.27e-85 33 375 3 335
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
6.65e-84 33 374 11 341
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
6.65e-84 33 374 11 341
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
2.93e-83 33 374 3 333
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.17e-117 31 372 25 368
Polygalacturonase OS=Gibberella fujikuroi OX=5127 GN=PGA PE=1 SV=1
7.47e-117 33 372 129 466
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
5.39e-116 33 374 173 512
Probable endopolygalacturonase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgaD PE=3 SV=1
8.88e-115 13 374 128 490
Probable endopolygalacturonase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaD PE=3 SV=2
1.95e-114 13 374 132 493
Endopolygalacturonase D OS=Aspergillus niger OX=5061 GN=pgaD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000676 0.999296 CS pos: 20-21. Pr: 0.9802

TMHMM  Annotations      help

There is no transmembrane helices in OAG24704.1.