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CAZyme Information: MELLADRAFT_44084-t26_1-p1

You are here: Home > Sequence: MELLADRAFT_44084-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Melampsora larici-populina
Lineage Basidiomycota; Pucciniomycetes; ; Melampsoraceae; Melampsora; Melampsora larici-populina
CAZyme ID MELLADRAFT_44084-t26_1-p1
CAZy Family GH2
CAZyme Description family 1 polysaccharide lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
406 43056.18 9.1407
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Mlarici-populina98AG31 16380 747676 8 16372
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 121 310 5.9e-67 0.9893048128342246

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 1.41e-38 122 309 2 186
Amb_all domain.
226384 PelB 1.24e-20 120 316 85 280
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 6.64e-11 128 309 26 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.75e-89 31 406 21 381
1.06e-82 27 406 17 380
4.76e-82 31 406 22 384
5.36e-82 13 405 10 388
2.67e-81 31 406 22 384

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.56e-72 31 351 5 314
Pectin Lyase B [Aspergillus niger]
2.01e-71 27 351 1 313
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
7.93e-71 27 351 1 313
Pectin Lyase A [Aspergillus niger]
4.50e-09 134 287 130 302
Structure of the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
5.59e-08 112 289 104 298
Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.71e-87 31 354 25 336
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
5.86e-82 31 406 24 379
Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1
1.41e-81 15 405 6 386
Probable pectin lyase E OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelE PE=3 SV=1
2.65e-80 19 351 13 335
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
2.65e-80 19 351 13 335
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.066532 0.933444 CS pos: 29-30. Pr: 0.8924

TMHMM  Annotations      download full data without filtering help

Start End
7 29