logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: KGB77456.1

You are here: Home > Sequence: KGB77456.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cryptococcus gattii VGII
Lineage Arthropoda; Insecta; ; Eriococcidae; Cryptococcus; Cryptococcus gattii VGII
CAZyme ID KGB77456.1
CAZy Family GH31
CAZyme Description polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
474 CP025759|CGC11 53265.66 5.2571
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CgattiiVGIIR265 6705 294750 281 6424
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in KGB77456.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 134 447 1.3e-61 0.7846153846153846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 3.91e-22 160 448 61 315
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 3.39e-21 70 447 77 417
polygalacturonase ADPG
215540 PLN03010 1.02e-14 70 466 56 409
polygalacturonase
215426 PLN02793 1.69e-14 160 433 151 396
Probable polygalacturonase
178580 PLN03003 4.48e-14 153 421 116 347
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 474 1 474
0.0 1 474 1 474
0.0 1 474 1 478
0.0 1 474 1 479
0.0 1 474 1 479

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.44e-19 60 403 15 330
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.75e-113 64 431 31 412
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
5.75e-113 64 431 31 412
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
7.65e-108 64 452 32 433
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
1.53e-107 64 452 32 433
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
3.29e-65 58 457 28 414
Alpha-L-rhamnosidase rgxB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxB PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000269 0.999674 CS pos: 18-19. Pr: 0.9681

TMHMM  Annotations      help

There is no transmembrane helices in KGB77456.1.