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CAZyme Information: KDQ29939.1

You are here: Home > Sequence: KDQ29939.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pleurotus ostreatus
Lineage Basidiomycota; Agaricomycetes; ; Pleurotaceae; Pleurotus; Pleurotus ostreatus
CAZyme ID KDQ29939.1
CAZy Family GH47
CAZyme Description polysaccharide lyase family 1 protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
506 KL198006|CGC17 55522.05 4.5708
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PostreatusPC15 12460 1137138 164 12296
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in KDQ29939.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 167 401 5.5e-48 0.9859154929577465

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
226384 PelB 5.46e-30 146 363 60 259
Pectate lyase [Carbohydrate transport and metabolism].
214765 Amb_all 2.32e-29 177 349 14 164
Amb_all domain.
366158 Pec_lyase_C 7.19e-21 170 348 27 188
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
8.59e-213 24 505 15 479
8.59e-213 24 505 15 479
1.22e-212 24 505 15 479
6.15e-204 23 504 506 974
5.51e-122 26 504 1 486

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.26e-23 167 355 75 264
Chain A, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi]
1.33e-22 167 355 75 264
Chain A, Pectate lyase [Dickeya chrysanthemi],1JRG_B Chain B, Pectate lyase [Dickeya chrysanthemi],1JTA_A Chain A, pectate lyase A [Dickeya chrysanthemi]
2.71e-21 32 353 15 358
Structure of Pectate Lyase from Acidovorax avenae subsp citrulli [Acidovorax citrulli AAC00-1],4HWV_B Structure of Pectate Lyase from Acidovorax avenae subsp citrulli [Acidovorax citrulli AAC00-1]
1.44e-11 180 353 80 228
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.01e-21 167 355 107 296
Pectate lyase A OS=Dickeya chrysanthemi OX=556 GN=pelA PE=1 SV=1
6.55e-21 163 353 86 247
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1
1.49e-20 176 348 89 236
Probable pectate lyase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyA PE=3 SV=1
1.49e-20 176 348 89 236
Probable pectate lyase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyA PE=3 SV=1
2.67e-20 167 348 106 288
Pectate lyase A OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000481 0.999510 CS pos: 27-28. Pr: 0.9724

TMHMM  Annotations      download full data without filtering help

Start End
13 35