CAZyme Information: KAG6620898.1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: KAG6620898.1
• CAZy Family: GT71
• CAZyme Description: Pectate lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
508		52476.15	4.0343

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiGKB4	19981	N/A	0	19981

• Gene Location: location=JAFJYM010000009:498685-500211(-)

Full Sequence      

MLSSFHMSLTAMATAVAIVGAATIDTSSPTGFAAGTTGGGSVDPVYPTSIDELSTYLSDD
EPRVIVLQQTLNFTGTEGSTTETGCRPTFNQECIAKNNGYKSQDVILMDGDTAMSQTGGC
DSDGIAVEVTYDNAAKNPLVVASNKTLVGEGTAGVLYGKGLIIEGSNVIVQNIHITELNP
HLVWGGDAITIRGADDKAPSGIWVDHVKVSRIGRQMVVVNFSGAMGLTISNSDFDGNTEY
SASCDGRHYWGFLLYGETTQISLVNNYIHETSGRSPKIGGTADQSVVVHAANNYFYDNSG
HAFDVAASAYVLAEGNYFDAVTTPNLDDEDGNFFVPTAASDCESSLSRDCELNVLTDSGT
LSGYNEDAVTSILSSYKTQIGGYAIAAASQFTAATASFGVGSVSSSISMSSTISSTAEDT
TSMTSTAVSSTSSDASSAASNTSASAAVSESAPVQASSTSSVAGDADSETATFTSAKTDT
NETETTTAANTTTATENAVKCRATRIRQ

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	129	319	3.8e-83	0.983957219251337

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	9.82e-39	129	321	2	189	Amb_all domain.
226384	PelB	8.23e-15	95	324	69	279	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	1.55e-12	117	318	7	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ACR19253.2|PL1_4	1.85e-188	21	405	22	406
ACR19257.1|PL1_4	1.97e-182	11	300	7	296
ACR19250.1|PL1_4	4.82e-161	28	406	195	564
ACR19256.1|PL1_4	6.63e-146	21	348	28	346
AHX74068.1|PL1_4	6.80e-146	28	401	26	397

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1IDJ_A	1.73e-88	28	392	6	344	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1IDK_A	2.44e-88	28	392	6	344	Pectin Lyase A [Aspergillus niger]
1QCX_A	2.71e-87	31	376	9	333	Pectin Lyase B [Aspergillus niger]
1PCL_A	9.58e-08	117	361	53	308	Chain A, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|B8N316|PELF_ASPFN	1.12e-95	14	371	9	352	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
sp|Q2UJA7|PELF_ASPOR	1.12e-95	14	371	9	352	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|Q8NJK6|PELF_ASPNG	5.66e-93	9	371	8	354	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	5.66e-93	9	371	8	354	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|B0YCL3|PELB_ASPFC	3.40e-92	31	370	28	349	Probable pectin lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelB PE=3 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.053047	0.946933	CS pos: 21-22. Pr: 0.7161

TMHMM  Annotations     

There is no transmembrane helices in KAG6620898.1.