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CAZyme Information: KAG6620769.1

You are here: Home > Sequence: KAG6620769.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID KAG6620769.1
CAZy Family GT71
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
909 JAFJYM010000009|CGC2 93939.43 4.3548
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiGKB4 19981 N/A 0 19981
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2:4 4.2.2.2:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL3 242 438 4.3e-78 0.9896907216494846
PL3 602 782 3e-75 0.9329896907216495

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397360 Pectate_lyase 1.25e-83 596 779 2 181
Pectate lyase.
397360 Pectate_lyase 9.38e-77 236 442 2 199
Pectate lyase.
223023 PHA03249 6.88e-04 459 575 66 184
DNA packaging tegument protein UL25; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.75e-149 228 490 16 275
1.60e-105 232 463 30 258
2.91e-101 233 463 31 258
4.83e-88 230 465 20 275
4.83e-88 230 465 20 275

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.82e-25 253 381 11 135
Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
1.24e-21 614 782 4 181
Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
1.13e-20 614 782 122 299
Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3.21e-20 241 381 4 138
The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725]
3.29e-20 241 381 5 139
The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii],3T9G_B The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.30e-56 239 460 28 241
Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
3.33e-53 599 778 39 214
Probable pectate lyase G OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyG PE=3 SV=1
2.43e-52 239 460 41 255
Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1
1.31e-51 599 776 35 208
Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1
6.52e-51 595 779 22 205
Probable pectate lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyF PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000249 0.999739 CS pos: 25-26. Pr: 0.9693

TMHMM  Annotations      help

There is no transmembrane helices in KAG6620769.1.