CAZyme Information: KAG6618633.1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: KAG6618633.1
• CAZy Family: GT60
• CAZyme Description: Polysaccharide lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
302		31560.88	8.8164

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiGKB4	19981	N/A	0	19981

• Gene Location: location=JAFJYM010000015:2599256-2600248(-)

Full Sequence      

MMRFLALLAAASCVLSAQALTTHEITEDITFDSLEVAEGGRKLAGAQVDTSLWAEKYTPG
QVIAAEDEERAIGLWPTSKGTVPLIRPRVVGPTTPFDGGMKTFKRSNVAFRSGAKMIRSN
AVFVVQAGGTLSNVIIAGGGGVFCETHNCALVNVWFRDSIQSALHVNSGTGITTITGGGA
RNVAHRVVYGQASGTVVISGGFYMENSGRLFESCGTCGPVKRGVIVDGVVSVNPTAELIR
VNQNYNDRGTISKASITTADSLPVCTRFNGGATPRKVGNGAFPPVCSYTNAAVTVRSPAT
QS

Enzyme Prediction     

EC	4.2.2.2:4

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL3	79	270	1.2e-38	0.9896907216494846

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397360	Pectate_lyase	8.37e-36	75	270	4	195	Pectate lyase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ26062.1|PL3_2	4.28e-108	11	298	10	283
ADN18841.1|PL3_2	4.34e-44	73	295	24	252
ADN18840.1|PL3_2	2.14e-42	60	294	21	259
ADN18837.1|PL3_2	7.09e-40	73	293	34	258
ADN18836.1|PL3_2	1.62e-33	75	280	22	234

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3B90_A	3.52e-09	124	270	36	196	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3B4N_A	7.62e-09	124	270	154	314	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CJ20|PLYG_ASPTN	7.53e-34	76	289	28	240	Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
sp|Q5BA88|PLYD_EMENI	4.64e-32	76	290	43	259	Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1
sp|Q0CJ49|PLYD_ASPTN	9.82e-32	76	289	35	247	Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1
sp|A1C4B8|PLYE_ASPCL	1.41e-31	50	288	13	247	Probable pectate lyase E OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=plyE PE=3 SV=1
sp|Q5ATC7|PLYH_EMENI	4.84e-29	76	289	41	254	Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000226	0.999769	CS pos: 19-20. Pr: 0.9778

TMHMM  Annotations     

There is no transmembrane helices in KAG6618633.1.