logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: KAG6609197.1

You are here: Home > Sequence: KAG6609197.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID KAG6609197.1
CAZy Family GH28
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
472 52231.95 8.4077
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiGKB4 19981 N/A 0 19981
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in KAG6609197.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT19 27 383 7.7e-63 0.7570621468926554

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
234580 lpxB 1.69e-63 23 379 1 273
lipid-A-disaccharide synthase; Reviewed
223834 LpxB 8.49e-62 23 388 1 285
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
397004 LpxB 2.26e-49 26 384 1 278
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
129319 lpxB 2.94e-29 28 384 10 284
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
167141 lpxB 9.62e-28 27 204 230 392
lipid-A-disaccharide synthase; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.49e-41 26 204 6 167
3.46e-41 26 204 6 167
1.29e-40 26 204 6 167
1.29e-40 26 204 6 167
1.29e-40 26 204 6 167

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.36e-19 23 204 6 170
Lipid A Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]
1.36e-19 23 204 6 170
Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.29e-41 26 204 6 167
Lipid-A-disaccharide synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=lpxB PE=3 SV=1
3.40e-37 24 432 17 377
Lipid-A-disaccharide synthase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=lpxB PE=3 SV=1
4.61e-36 24 208 40 218
Probable lipid-A-disaccharide synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXB PE=2 SV=1
8.18e-36 25 396 3 290
Lipid-A-disaccharide synthase OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=lpxB PE=3 SV=1
8.18e-36 25 396 3 290
Lipid-A-disaccharide synthase OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000078 0.000001

TMHMM  Annotations      help

There is no transmembrane helices in KAG6609197.1.