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CAZyme Information: KAG6608740.1

You are here: Home > Sequence: KAG6608740.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID KAG6608740.1
CAZy Family GH28
CAZyme Description Alpha-L-arabinofuranosidase B
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
332 34513.08 4.8721
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiGKB4 19981 N/A 0 19981
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.55:24 3.2.1.37:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH54 1 282 1.6e-122 0.9018987341772152

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
401229 ArabFuran-catal 2.29e-159 1 281 30 315
Alpha-L-arabinofuranosidase B, catalytic. Members of this family, which are present in fungal alpha-L-arabinofuranosidase B, adopt a beta-sandwich fold similar to that of Concanavalin A-like lectins/glucanase. The beta-sandwich fold consists of two anti-parallel beta-sheets with seven and and six strands, respectively. In addition, there are four helices outside of the beta-strands. The beta-sandwich strands are closely packed and curved with a jelly roll topology, creating a small catalytic pocket. The domain catalyzes the hydrolysis of alpha-1,2-, alpha-1,3- and alpha-1,5-L-arabinofuranosidic bonds in L-arabinose-containing hemicelluloses such as arabinoxylan and L-arabinan.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.98e-133 1 281 49 328
5.42e-116 1 286 71 357
1.05e-115 1 284 70 354
4.07e-113 1 286 74 360
5.04e-112 1 286 71 361

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.04e-102 1 284 32 320
Crystal structure of arabinofuranosidase [Aspergillus luchuensis],1WD4_A Crystal structure of arabinofuranosidase complexed with arabinose [Aspergillus luchuensis],6SXS_AAA Chain AAA, Alpha-L-arabinofuranosidase B [Aspergillus luchuensis]
1.07e-102 1 284 33 321
GH54 a-l-arabinofuranosidase soaked with aziridine inhibitor [Aspergillus luchuensis IFO 4308]
2.94e-102 1 284 32 320
E221Q mutant of GH54 a-l-arabinofuranosidase soaked with 4-nitrophenyl a-l-arabinofuranoside [Aspergillus luchuensis IFO 4308]
8.30e-102 1 284 32 320
Chain A, alpha-L-arabinofuranosidase B [Aspergillus luchuensis],2D44_A Chain A, alpha-L-arabinofuranosidase B [Aspergillus luchuensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.99e-104 1 286 57 347
Probable alpha-L-arabinofuranosidase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=abfB PE=3 SV=1
3.89e-103 1 284 49 337
Probable alpha-L-arabinofuranosidase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=abfB PE=3 SV=1
3.89e-103 1 284 49 337
Alpha-L-arabinofuranosidase B OS=Aspergillus niger OX=5061 GN=abfB PE=1 SV=1
1.34e-102 1 280 57 341
Probable alpha-L-arabinofuranosidase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=abfB PE=3 SV=1
4.51e-102 1 280 52 335
Arabinofuranosidase/B-xylosidase OS=Trichoderma koningii OX=97093 GN=xyl1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999841 0.000197

TMHMM  Annotations      help

There is no transmembrane helices in KAG6608740.1.