CAZyme Information: KAG6580204.1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: KAG6580204.1
• CAZy Family: AA3
• CAZyme Description: pectin lyase F

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
897	JAFJYM010000112|CGC1	92555.81	6.6273

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiGKB4	19981	N/A	0	19981

• Gene Location: location=JAFJYM010000112:301722-304593(+)

Full Sequence      

MVVINFSGATGVTISNSDFDGNTKFSASCDGHHYWGFLILGKKTELSLIGNYIHHTSGRS
PKIGGHNGETSVVHAANNYFFENSGHAFDVATGGYVLAEGNYFASVKSPNLDDPRGNFCG
KLSGCSQDKVGSQLGDVKKMISGYKVAAAVKFSEASGNFGVGELGGGVAQTSDSSGATAP
SSDASASQETDIPSPKQDQQTKSPKVTMSPATKAPASPKATTTPATQTPATTATPIPTNV
PVTKTPAATTKPIYPTSIKELTTYLSDAEPRVIVLDQEFKFVNTEGSTTEGGCRPTNNQQ
CLAKNNGFKGQDAILMDGDNNMKQTGGCDSGGISVDVTYDNAAKEPLTVASDKTLVGEGT
KGVLNGKGLLITGSNVIVQNIHITNLNPHLVWGGDAITIRGEGDVAPKGIWIDHVKVSSI
GRQMVVINFSGATGVTISNSDFDGNTKFSASCDGHHYWGFLILGKKTELSLIGNYIHHTS
GRSPKIGGHNGETSVVHAANNYFFENSGHAFDVATGGYVLAEGNYFASVKSPNLDDPRGN
FLVPTAAGDCKATIGRDCVLNVLTDSGKLSGCSQDKVGSQLGDVKKMISGYKVAAAVKFS
EASGNFGVGELGGGVAQTSDSSGATAPSSDASASQETDIPSPKQDQQTKSPKVTMSPATK
APASPKATTTPATQTPATTATPIPTNVPVTKTPAATTKPSKSQPLTPSTPTTGNANAGGA
QGFAAGTTGGGNAKPVYPTSIKELTTYLSDAEPRVIVLDQEFKFVNTEGSTTEGGCRPTN
NQQCLAKNNGFKGQDAILMDGDNNMKQTGGCDSGGISVDVTYDNAAKEPLTVASDKTLVG
EGTKGVLNGKGLLITGSNVIVQNIHITNLNPHLVWGGDAITIRGEGDVAPRAFGSTT

Enzyme Prediction     

EC	4.2.2.10:1	4.2.2.10:1	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	337	527	1e-81	0.983957219251337
PL1	1	104	2.8e-38	0.5401069518716578
PL1	820	886	4.4e-28	0.3582887700534759

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	1.56e-37	336	526	1	186	Amb_all domain.
214765	Amb_all	2.64e-15	819	884	1	67	Amb_all domain.
226384	PelB	2.77e-14	330	526	82	273	Pectate lyase [Carbohydrate transport and metabolism].
214765	Amb_all	7.49e-13	2	103	94	186	Amb_all domain.
366158	Pec_lyase_C	1.67e-11	330	526	13	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ACR19253.2|PL1_4	1.58e-232	253	753	46	534
ACR19250.1|PL1_4	1.86e-170	253	620	212	570
ACR19256.1|PL1_4	1.22e-153	253	556	52	346
ACR19257.1|PL1_4	3.36e-134	253	508	41	296
ACR19254.1|PL1_4	1.26e-120	253	611	43	398

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	2.36e-74	253	571	23	324	Pectin Lyase B [Aspergillus niger]
1IDJ_A	1.66e-72	253	605	23	358	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1IDK_A	1.18e-71	253	605	23	358	Pectin Lyase A [Aspergillus niger]
1PCL_A	6.86e-08	322	535	50	285	Chain A, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|B8N316|PELF_ASPFN	5.57e-89	255	633	45	404	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
sp|Q2UJA7|PELF_ASPOR	1.51e-88	255	633	45	404	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|Q0CZD4|PELF2_ASPTN	1.34e-87	255	614	45	383	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	2.45e-84	255	640	46	411	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q8NJK6|PELF_ASPNG	2.45e-84	255	640	46	411	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000036	0.000005

TMHMM  Annotations     

There is no transmembrane helices in KAG6580204.1.