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CAZyme Information: KAG6580182.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora cinnamomi | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi | |||||||||||
| CAZyme ID | KAG6580182.1 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | pectin lyase F | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 645 | 835 | 7.5e-83 | 0.9893048128342246 |
| PL1 | 129 | 321 | 3.2e-80 | 0.9893048128342246 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 3.22e-40 | 128 | 324 | 2 | 190 | Amb_all domain. |
| 214765 | Amb_all | 3.31e-40 | 644 | 838 | 2 | 190 | Amb_all domain. |
| 226384 | PelB | 1.38e-17 | 639 | 834 | 82 | 273 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 1.44e-15 | 115 | 320 | 4 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| 226384 | PelB | 8.68e-15 | 123 | 320 | 82 | 273 | Pectate lyase [Carbohydrate transport and metabolism]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 4.31e-184 | 5 | 407 | 5 | 406 | |
| 1.85e-163 | 377 | 946 | 3 | 584 | |
| 2.46e-142 | 544 | 816 | 23 | 296 | |
| 3.02e-139 | 4 | 350 | 10 | 346 | |
| 3.19e-130 | 28 | 405 | 25 | 399 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3.91e-79 | 544 | 880 | 5 | 325 | Pectin Lyase B [Aspergillus niger] |
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| 9.42e-77 | 540 | 881 | 1 | 325 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 9.42e-77 | 540 | 881 | 1 | 325 | Pectin Lyase A [Aspergillus niger] |
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| 3.51e-07 | 123 | 363 | 59 | 308 | Chain A, PECTATE LYASE E [Dickeya chrysanthemi] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6.55e-90 | 5 | 414 | 3 | 392 | Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1 |
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| 6.55e-90 | 5 | 414 | 3 | 392 | Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1 |
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| 1.41e-89 | 548 | 879 | 29 | 343 | Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1 |
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| 1.57e-89 | 548 | 880 | 29 | 346 | Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1 |
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| 1.57e-89 | 548 | 880 | 29 | 346 | Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000258 | 0.999688 | CS pos: 20-21. Pr: 0.9852 |