CAZyme Information: KAG6580181.1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: KAG6580181.1
• CAZy Family: AA3
• CAZyme Description: pectin lyase F

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
923		96168.18	4.8500

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiGKB4	19981	N/A	0	19981

• Gene Location: location=JAFJYM010000112:268707-271922(+)

Full Sequence      

MVPVLLGALLATLLAHGSFAEAGPGATGSPVGFAAGTTGGGTANPVYPTTIDELSKYLSD
EQARVIVLKQEFTFVGTEGKTTANGCRPTNNQECLAKKSGFLGQDVILQDGDTSMQNTGG
CDSGGISVQVTYDNAAKTPLTVVSDKTLVGEGTKGVLNGKGLLIIGSNVIIQNIHITNLN
PHLVWGGDAISMGASSSKESIKNVWIDHVKISSVGRQMIVVHYGGAAGLTISNSDFDGKT
KYSTSCDGHHYWGFLIYGSTTQLSLLGNYIHSTSGRSPKIGGESDMNAIVHAANNHFEDN
TGHAFDVRQNAYVLAEGNYFSSVKMPNMEETEGSFFVPTAGGDCKASIGRDCEVNVLTDS
GKLAGYSEDAVGAQIKTYQKEVGGYEVKAATKFSAATTQGFAAGTTGGGNTEPVYPATID
ELAKYLSDKQARVIVLKQEFNFVGTEGNSTSAGCRPTNNQQCLARHNGFQGQDVILMDGD
TSMKQTGGCDSGGISIQVTYDNAPKKPLTVASDKTLVGEGTKGVLNGKGLLIEGSNVIIQ
NIHITNLNPHLVWGGDAISIGGNGEAPKGIWIDHVKISSIGRQMVVVHFSGATGLTISNS
DFDGKTEFSASCDGHHYWGFLLYGKTTQISLLGNYIHQTSGRSPKIGGTEGQNVAVHAAN
NYFDDNTGHAFDVAAGAYVLAEGNYFSSVKTPNLEDAEGNFFVPARESDCKTSIHRACKL
NVLKESGALTSNSARTALAEISKYSKPIGGYAATDAAQLSVASSNFGVGQLESSSVIQTS
TSSDVGSANAAQKPTQETMVPSKESSATSSEPTSMDSFSTGSTSTTQDSTSTNTQVPSGS
TEGSFGISQTSTELPPTSDTPEQAQAVSSSWAEAPPMESPSTANEASSTDMPLGTVSPYT
EDSGAAESTAQWGDMMQGVAQTN

Enzyme Prediction     

EC	4.2.2.10:1	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	497	687	5.9e-83	0.9893048128342246
PL1	129	321	2.5e-80	0.9893048128342246

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	9.88e-40	128	324	2	190	Amb_all domain.
214765	Amb_all	1.18e-39	496	690	2	190	Amb_all domain.
226384	PelB	6.96e-18	491	686	82	273	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	8.61e-16	115	320	4	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
226384	PelB	4.62e-15	123	320	82	273	Pectate lyase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ACR19253.2|PL1_4	2.20e-183	385	775	17	408
ACR19250.1|PL1_4	5.05e-161	397	798	195	584
ACR19257.1|PL1_4	1.47e-142	400	668	27	296
ACR19256.1|PL1_4	8.57e-141	4	350	10	346
AHX74068.1|PL1_4	7.62e-128	28	404	25	397

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	4.74e-80	25	365	2	324	Pectin Lyase B [Aspergillus niger]
1IDJ_A	3.42e-79	25	370	2	325	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1IDK_A	4.75e-79	25	370	2	325	Pectin Lyase A [Aspergillus niger]
1PCL_A	2.92e-07	123	363	59	308	Chain A, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|B8N316|PELF_ASPFN	8.33e-91	397	732	26	346	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
sp|Q2UJA7|PELF_ASPOR	8.33e-91	397	732	26	346	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|Q0CZD4|PELF2_ASPTN	1.02e-90	400	731	29	343	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	2.57e-88	5	373	3	354	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q8NJK6|PELF_ASPNG	2.57e-88	5	373	3	354	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000258	0.999688	CS pos: 20-21. Pr: 0.9852

TMHMM  Annotations     

There is no transmembrane helices in KAG6580181.1.