logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: KAG6580118.1

You are here: Home > Sequence: KAG6580118.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID KAG6580118.1
CAZy Family AA3
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
207 21266.95 6.0835
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiGKB4 19981 N/A 0 19981
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 130 196 4.6e-29 0.3582887700534759

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 3.88e-17 129 194 1 67
Amb_all domain.
226384 PelB 2.19e-07 18 196 33 153
Pectate lyase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.04e-110 1 201 1 201
6.22e-92 24 200 19 195
9.44e-82 5 201 11 198
8.22e-72 28 200 194 357
2.91e-69 23 194 20 188

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.82e-41 28 192 5 158
Pectin Lyase B [Aspergillus niger]
1.46e-35 27 192 4 158
Pectin Lyase A [Aspergillus niger]
2.05e-35 27 192 4 158
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.97e-43 12 191 1 166
Probable pectin lyase E OS=Aspergillus niger OX=5061 GN=pelE PE=3 SV=1
6.73e-43 11 194 9 181
Pectin lyase OS=Colletotrichum gloeosporioides OX=474922 GN=PNLA PE=3 SV=1
1.74e-41 23 194 18 174
Probable pectin lyase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelC PE=3 SV=1
2.54e-41 8 192 5 177
Pectin lyase 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pel2 PE=1 SV=1
2.54e-41 8 192 5 177
Probable pectin lyase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000384 0.999595 CS pos: 22-23. Pr: 0.9697

TMHMM  Annotations      help

There is no transmembrane helices in KAG6580118.1.