CAZyme Information: KAG6580105.1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: KAG6580105.1
• CAZy Family: AA3
• CAZyme Description: Pectate lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
348		37446.05	9.5578

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiGKB4	19981	N/A	0	19981

• Gene Location: location=JAFJYM010000112:308102-309148(-)

Full Sequence      

MRNYLKDSQPRVIVLTKTFDFRGSEGTKTETGCRPKSNRDCLAKNNGYKGQDVILQSGGM
ANTGGCVDGTQVKITYDLAGSKNPLVVSSNKTLRGLGTSGVIKGKGLWLNGNNIIIQNIH
ITQLNPHLIWGGDAIYIQGLNSGKTAMERIWIDHVKISNLGRQMVATGTASVKSMTISNC
EFDGRTQYSATCDGNHYWTFLFLGTQTQVTLVNNYVHNTSGRSPKVGGSSVVHAVNNYWA
NNTGFSYDVVENGNVLLEGNYFESTAVPNKHDSETVGAIIVPSSSTQSTCKSALGRNCAE
NVLQRCGELTGNRESAALSNAKKVASYHKPTSAKKFGSTSQNFGVGTI

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	74	263	6.2e-80	0.983957219251337

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	8.86e-24	72	265	2	189	Amb_all domain.
366158	Pec_lyase_C	1.44e-10	81	262	26	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
226384	PelB	3.11e-10	47	292	51	305	Pectate lyase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ACR19252.1|PL1_4	5.24e-218	1	348	85	432
ACR19249.1|PL1_4	4.30e-217	1	348	85	432
AHX74067.1|PL1_4	4.30e-217	1	348	85	432
ACR19247.1|PL1_4|4.2.2.10	2.45e-213	1	348	51	398
ACR19251.1|PL1_4	3.48e-213	1	348	51	398

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	1.45e-67	3	346	33	358	Pectin Lyase B [Aspergillus niger]
1IDK_A	9.48e-62	3	315	33	327	Pectin Lyase A [Aspergillus niger]
1IDJ_A	1.14e-59	3	301	33	313	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CZD4|PELF2_ASPTN	5.42e-82	1	310	51	342	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|Q8NJK6|PELF_ASPNG	1.86e-78	1	329	52	375	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	1.86e-78	1	329	52	375	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q2UJA7|PELF_ASPOR	2.84e-78	1	348	51	382	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|B8N316|PELF_ASPFN	2.84e-78	1	348	51	382	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000031	0.000010

TMHMM  Annotations     

There is no transmembrane helices in KAG6580105.1.