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CAZyme Information: KAG6580103.1

You are here: Home > Sequence: KAG6580103.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID KAG6580103.1
CAZy Family AA2|AA2
CAZyme Description pectate lyase/amb allergen
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
546 55944.16 4.7867
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiGKB4 19981 N/A 0 19981
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 334 524 5.3e-80 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 1.71e-34 333 527 1 190
Amb_all domain.
226384 PelB 7.23e-16 242 524 40 274
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 1.79e-12 337 523 23 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
214765 Amb_all 2.54e-06 1 52 144 190
Amb_all domain.
273167 rad23 0.002 114 207 57 152
UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.64e-192 237 546 190 499
3.29e-173 237 546 30 339
2.28e-155 237 546 24 342
4.45e-120 241 505 23 296
1.57e-110 241 543 25 334

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.99e-79 237 539 1 292
Pectin Lyase B [Aspergillus niger]
1.91e-72 239 528 3 281
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
4.07e-71 239 543 3 296
Pectin Lyase A [Aspergillus niger]
6.31e-10 337 538 69 293
Chain A, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.13e-94 239 546 23 318
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
4.64e-92 238 539 22 314
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
4.64e-92 238 539 22 314
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
1.12e-84 234 539 16 310
Probable pectin lyase A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=pelA PE=3 SV=1
2.08e-82 236 546 19 316
Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999592 0.000460

TMHMM  Annotations      help

There is no transmembrane helices in KAG6580103.1.