CAZyme Information: KAG6579854.1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: KAG6579854.1
• CAZy Family: AA17
• CAZyme Description: pectin lyase F

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
365		38668.74	6.8889

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiGKB4	19981	N/A	0	19981

• Gene Location: location=JAFJYM010000115:908624-909920(+)

Full Sequence      

MLSIRAKLGFAAGTTGGGSATPDYPATIEELKHLLSDDQPRVIVLDKEFNFVGTEGTITE
TGCRPRAHTECLAKNNGFKGQDVILFPGDTTLTHTGGCDQQVKVQVTYDKATKDALFVSS
NKTLRGIDQKGILRGKDLTISNSDFDGRTEFSTSCDGRHYWGFILDGTTTRVSFLNNYIH
ETSGRSPKIVGASSPNANVVAHIANNYWADNSGHSFEPGANAFVLAEGNYFDDTVEPVLA
DESKSSISTADDCRAALGRACSANVLEKCGAFDSVNGGRALDALKQYKAIAGYIPAKASQ
LAKSSTNFGVGDLGDSPIQGNVKQGNGSPSPKTTARKGGNKTKKKSGEDNSADAVQQENS
AKNHS

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	137	232	3.5e-36	0.48663101604278075

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	1.06e-10	139	234	105	189	Amb_all domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AHX74068.1|PL1_4	1.69e-106	3	313	23	399
ADN18834.1|PL1_4	2.40e-106	3	313	23	399
ADN18833.1|PL1_4	1.71e-95	3	313	23	399
ACR19253.2|PL1_4	1.55e-88	9	314	32	405
ACR19248.1|PL1_4	1.74e-88	22	313	133	490

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	6.48e-47	4	270	4	320	Pectin Lyase B [Aspergillus niger]
1IDK_A	2.90e-43	9	300	9	356	Pectin Lyase A [Aspergillus niger]
1IDJ_A	3.14e-41	9	300	9	356	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CZD4|PELF2_ASPTN	5.82e-54	4	278	24	347	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|B8N316|PELF_ASPFN	1.99e-53	4	270	24	341	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
sp|Q2UJA7|PELF_ASPOR	1.99e-53	4	270	24	341	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|Q8NJK6|PELF_ASPNG	1.54e-52	9	270	30	342	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	1.54e-52	9	270	30	342	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000080	0.000001

TMHMM  Annotations     

There is no transmembrane helices in KAG6579854.1.