logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: KAG1712430.1

You are here: Home > Sequence: KAG1712430.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora capsici
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora capsici
CAZyme ID KAG1712430.1
CAZy Family PL1
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
261 27234.01 9.0156
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcapsiciLT1534 28579 763924 5206 23373
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL3 39 233 5e-82 0.9948453608247423

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397360 Pectate_lyase 7.74e-97 33 237 1 199
Pectate lyase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.69e-180 1 261 1 261
2.25e-153 1 260 1 260
8.64e-108 28 258 18 250
3.46e-86 33 246 19 235
4.69e-85 29 258 21 273

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.88e-26 45 193 5 145
Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
3.17e-23 63 238 8 201
Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
6.06e-23 41 219 6 181
The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725]
6.20e-23 41 219 7 182
The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii],3T9G_B The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii]
2.28e-22 63 238 126 319
Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.51e-67 37 246 28 233
Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
1.34e-66 37 254 23 236
Probable pectate lyase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyD PE=3 SV=1
1.34e-66 37 254 23 236
Probable pectate lyase D OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyD PE=3 SV=1
1.94e-66 37 253 37 247
Probable pectate lyase E OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyE PE=3 SV=1
2.60e-66 37 254 22 235
Probable pectate lyase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000288 0.999668 CS pos: 21-22. Pr: 0.9733

TMHMM  Annotations      download full data without filtering help

Start End
2 24