CAZyme Information: KAG1711933.1

Basic Information

• Species: Phytophthora capsici
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora capsici
• CAZyme ID: KAG1711933.1
• CAZy Family: GT71
• CAZyme Description: Amb_all domain-containing protein [Source:UniProtKB/TrEMBL;Acc:G2XKW4]

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
567		58240.79	4.0112

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcapsiciLT1534	28579	763924	5206	23373

• Gene Location: location=JADEVP010000002:1982015-1983718(-)

Full Sequence      

MKVFRYGFIAAFVFATQYTAAINTGTAPGLASGATGGGDTDPVYPTTIDELTSYLSDDET
RVIILQQEFDYRESEGSTTENGCRPLSNQECIAKNNGCKGQDVILQSGGMSGTGGCTDGI
SVQVTYDNAGPNPLQVQGNKTIRGVGTSGVIIGKGLWILGSNVIVQNIHITNLNPHLIWG
GDAIYIQGADGGETALENVWFDHVKISSIGRQMIATNTASVKSMTISNCDFDGYTEYSAS
CDNRHYWTMLFYGTETQVSLVNNYIHQTSGRSPKVGGNTILHAANNYFYNNSGHNFDPID
ESYTVAEGNYMDTCTEPILLDDDATGAIMVPSSDTHSYCESALGRDCVVNTVVNSDAELT
GQNEESAVTTAATVAKAYEPSAAATLALSSSNFGVGNLDVIDGSSSSGTTIATSSSTTSS
GSTTSTTAASSVASSIESMTSSASTASSAAWSSSSSNDTTAQGTLYSSPSSNVDASSATE
LSTSVAGEADDLTATGSSSYASSSTASSSAASDYSTATIASSQTSSLSAASSSEAGSTTT
ETSTAGSAASTSSPTAPTTTNCNARRQ

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	123	312	3.2e-80	0.9893048128342246

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	2.94e-29	122	310	2	185	Amb_all domain.
226384	PelB	2.05e-08	97	323	51	285	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	4.37e-07	132	309	28	209	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ACR19254.1|PL1_4	0.0	1	567	1	567
ACR19247.1|PL1_4|4.2.2.10	7.41e-173	1	398	1	398
ACR19251.1|PL1_4	7.41e-173	1	398	1	398
ACR19255.1|PL1_4	4.24e-172	1	398	1	398
ACR19252.1|PL1_4	5.10e-161	22	396	56	430

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1IDJ_A	1.43e-78	24	350	4	313	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1IDK_A	3.96e-78	24	350	4	313	Pectin Lyase A [Aspergillus niger]
1QCX_A	2.75e-74	25	355	5	319	Pectin Lyase B [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q8NJK6|PELF_ASPNG	4.80e-87	24	355	25	341	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	4.80e-87	24	355	25	341	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q5BA61|PELB_EMENI	3.13e-83	15	350	14	333	Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1
sp|B0YCL3|PELB_ASPFC	3.03e-82	25	363	24	344	Probable pectin lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelB PE=3 SV=2
sp|Q5B3J8|PELF_EMENI	7.20e-82	20	356	16	336	Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000262	0.999713	CS pos: 21-22. Pr: 0.9687

TMHMM  Annotations     

There is no transmembrane helices in KAG1711933.1.