CAZyme Information: KAG1696318.1

Basic Information

• Species: Phytophthora capsici
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora capsici
• CAZyme ID: KAG1696318.1
• CAZy Family: GH17
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1006		103650.30	4.0606

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcapsiciLT1534	28579	763924	5206	23373

• Gene Location: location=JADEVP010000044:16304-19324(+)

Full Sequence      

MVKIRAAAAASLALLLATLSATLADDSWGDTAQYTNSDSVTQEQTPATWEASKQSDGDKS
DKKSDDDQKSDNDQKSDDKYKSEDDSNVWTPVPANGDSNEDTTDTSDNSLAQAPASSSNG
KADGESDDDKSDTSPSSEQDDNSSPQTESGSKNAGDNTDSSSESTGTSESKGPVAPSGGS
QTTGGGSTPSSGGGKVPDGTWPTSTGAVKLTAPHIVKAGEVFDGKMQTFDRSDVTCSEGE
GQKDTAVFLVEAGGTLKNAIIGKNQKEGVHCDDHDCTIENVWWDDVCEDALSVKGGTASS
VTTVTNCGARSADDKVVQHNGQGTVNIDGFYAESFGKLYRSCGTCGDTPRVVTVKNVYAV
DPKVSVITVNKNYGDKATLSNIWIKTSGGDDVKVCQWSQGGDNPSNLGDGPSPPLCQYSE
SDVHINQDISQAGGSSPSTGSTPATPSDGSSTQQVPPSTESSDNSDDTTEAPAGGSQTTS
PQPPATPTDSSGDDNSGDDNAEAPAPSSGGSQTSETPATGSQTTGGGGGSAPSTGGGSST
PSSGGGKVPDGTWPTSTGTVQLKAAQTIKAGEVFDGKMQTFERSGITCEGQTESGSDTAV
FMLEPGATLKNAIIGKNQMEGVHCDEHDCTIENVWWDDVCEDALSVKGGTASSVSTVTGG
GARSADDKVIQHNGYGTVKIDGFYGEDISKLYRSCGTCGDRPKKVEVSNVYIVNPDNAVV
TVNKNWGDEATLSNIWIKSAGDKVKICQWSQGNADGEPEMLGDGPSPPLCQYSESDVHIN
GDVSQAGGSTPSKGSTGGGSSTEQAPGTVSPASPSESDEGGSSTSQNQPPSTSSGDADNG
TDAGEDPSQDNKSDESKSKSSDENKSDENENKSDENKSKSGGENKSDGENKTDDENKSDE
NKSKSDDNKSDENKSKSGDENNSDDDKSKPSNEGNGDDNKSGEKSDDDNSESTKQENDSV
TQSEVAGEAGGWNQLSLTAVDSEAAKKDTLTSSTPMKKCNVRRRKN

Enzyme Prediction     

EC	4.2.2.2:4	4.2.2.2:4

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL3	556	752	2.8e-78	0.9948453608247423
PL3	205	400	1.2e-74	0.9896907216494846

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397360	Pectate_lyase	1.24e-84	551	756	2	199	Pectate lyase.
397360	Pectate_lyase	3.73e-82	199	403	2	198	Pectate lyase.
227596	MDN1	8.52e-09	807	970	3796	3964	Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis].
380146	MSCRAMM_SdrC	4.50e-08	772	970	713	905	MSCRAMM family adhesin SdrC. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.
411414	MSCRAMM_ClfB	4.74e-07	765	969	564	768	MSCRAMM family adhesin clumping factor ClfB. Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADN18841.1|PL3_2	3.93e-152	548	796	21	269
ADN18840.1|PL3_2	1.82e-99	548	777	31	258
ADN18837.1|PL3_2	2.37e-90	196	423	31	258
ADN18839.1|PL3_2	2.23e-83	548	779	23	275
AHX74070.1|PL3_2	2.23e-83	548	779	23	275

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1EE6_A	2.01e-24	568	696	11	135	Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
3B90_A	1.90e-21	217	400	4	196	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3B4N_A	1.75e-20	217	400	122	314	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
4EW9_A	5.72e-19	555	696	2	138	The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725]
3T9G_A	5.86e-19	555	696	3	139	The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii],3T9G_B The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CJ20|PLYG_ASPTN	1.46e-56	554	774	28	241	Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
sp|A1DCY5|PLYD_NEOFI	2.06e-55	202	420	22	236	Probable pectate lyase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyD PE=3 SV=1
sp|Q5BA88|PLYD_EMENI	2.21e-55	554	774	43	259	Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1
sp|Q0CJ49|PLYD_ASPTN	7.60e-55	202	420	35	248	Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1
sp|Q5ATC7|PLYH_EMENI	6.15e-54	554	774	41	255	Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000299	0.999649	CS pos: 24-25. Pr: 0.9772

TMHMM  Annotations     

There is no transmembrane helices in KAG1696318.1.