logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: KAF5680484.1

You are here: Home > Sequence: KAF5680484.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Fusarium circinatum
Lineage Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium circinatum
CAZyme ID KAF5680484.1
CAZy Family GH32
CAZyme Description pectate lyase 1
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
328 JAAQPE010000195|CGC1 35358.29 4.4693
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_FcircinatumNRRL25331 13905 N/A 0 13905
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in KAF5680484.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 83 263 6.8e-107 0.989010989010989

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
226384 PelB 9.43e-66 51 327 48 345
Pectate lyase [Carbohydrate transport and metabolism].
214765 Amb_all 7.68e-65 76 264 3 190
Amb_all domain.
366158 Pec_lyase_C 9.39e-45 69 260 11 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.40e-233 1 327 1 327
1.40e-233 1 327 1 327
1.40e-233 1 327 1 327
1.40e-233 1 327 1 327
3.30e-232 1 328 1 328

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.62e-50 57 327 46 326
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1.93e-36 89 237 76 246
Chain A, PECTATE LYASE E [Dickeya chrysanthemi]
2.12e-33 91 238 130 302
Structure of the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1.03e-31 48 324 42 341
Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2.19e-31 51 249 21 225
Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.57e-64 15 286 17 286
Pectate lyase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyA PE=1 SV=1
1.53e-60 61 306 59 302
Pectate lyase A OS=Aspergillus niger OX=5061 GN=plyA PE=1 SV=1
2.16e-60 61 306 59 302
Probable pectate lyase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=plyA PE=3 SV=1
2.26e-59 63 306 59 300
Probable pectate lyase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyA PE=3 SV=1
2.26e-59 63 306 59 300
Probable pectate lyase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000349 0.999644 CS pos: 17-18. Pr: 0.7973

TMHMM  Annotations      help

There is no transmembrane helices in KAF5680484.1.