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CAZyme Information: HpaG812935:RNA-p1

You are here: Home > Sequence: HpaG812935:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Hyaloperonospora arabidopsidis
Lineage Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis
CAZyme ID HpaG812935:RNA-p1
CAZy Family GT60
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
612 67491.56 5.3884
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_HarabidopsidisEmoy2 14267 559515 285 13982
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.37:92 3.2.1.55:39 3.2.1.21:1 3.2.1.6:1 3.2.1.73:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH3 2 152 1.9e-36 0.6064814814814815

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
178629 PLN03080 1.98e-107 2 575 171 774
Probable beta-xylosidase; Provisional
185053 PRK15098 1.51e-85 6 569 176 750
beta-glucosidase BglX.
396478 Glyco_hydro_3_C 1.59e-53 226 456 1 216
Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933.
224389 BglX 2.64e-41 5 251 139 364
Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
395747 Glyco_hydro_3 3.82e-24 2 186 140 316
Glycosyl hydrolase family 3 N terminal domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 608 48 655
1.67e-224 1 579 168 739
2.30e-105 2 567 133 689
6.21e-105 1 568 132 689
2.41e-104 1 568 132 689

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.38e-93 1 567 145 715
Chain A, xylan 1,4-beta-xylosidase [Phanerodontia chrysosporium]
1.38e-93 1 567 145 715
Chain A, xylan 1,4-beta-xylosidase [Phanerodontia chrysosporium]
6.24e-81 1 579 168 751
Chain A, BETA-XYLOSIDASE [Trichoderma reesei],5A7M_B Chain B, BETA-XYLOSIDASE [Trichoderma reesei]
6.36e-81 1 579 168 751
Chain A, BETA-XYLOSIDASE [Trichoderma reesei],5AE6_B Chain B, BETA-XYLOSIDASE [Trichoderma reesei]
6.42e-80 1 571 167 741
GH3 exo-beta-xylosidase (XlnD) [Aspergillus nidulans FGSC A4],6Q7I_B GH3 exo-beta-xylosidase (XlnD) [Aspergillus nidulans FGSC A4],6Q7J_A Chain A, Exo-1,4-beta-xylosidase xlnD [Aspergillus nidulans FGSC A4],6Q7J_B Chain B, Exo-1,4-beta-xylosidase xlnD [Aspergillus nidulans FGSC A4]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.09e-98 1 566 168 734
Probable exo-1,4-beta-xylosidase bxlB OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=bxlB PE=3 SV=1
2.41e-98 1 566 189 755
Probable exo-1,4-beta-xylosidase bxlB OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=bxlB PE=3 SV=1
6.86e-98 1 563 171 743
Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BXL2 PE=2 SV=1
1.08e-96 1 565 170 736
Probable exo-1,4-beta-xylosidase bxlB OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=bxlB PE=3 SV=1
1.08e-96 1 565 170 736
Probable exo-1,4-beta-xylosidase bxlB OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=bxlB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000045 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in HpaG812935:RNA-p1.