You are browsing environment: FUNGIDB
CAZyme Information: HpaG812720:RNA-p1
You are here: Home > Sequence: HpaG812720:RNA-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Hyaloperonospora arabidopsidis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis | |||||||||||
| CAZyme ID | HpaG812720:RNA-p1 | |||||||||||
| CAZy Family | GT60 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 125 | 318 | 7e-79 | 0.9946524064171123 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 7.86e-36 | 124 | 320 | 2 | 190 | Amb_all domain. |
| 226384 | PelB | 2.81e-13 | 21 | 336 | 26 | 298 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 7.62e-09 | 105 | 316 | 2 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 3.27e-197 | 10 | 436 | 8 | 441 | |
| 1.33e-196 | 10 | 436 | 8 | 441 | |
| 2.41e-165 | 23 | 436 | 21 | 400 | |
| 1.59e-163 | 23 | 384 | 21 | 380 | |
| 3.99e-159 | 11 | 436 | 9 | 410 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.93e-80 | 26 | 370 | 4 | 330 | Pectin Lyase B [Aspergillus niger] |
|
| 2.20e-72 | 27 | 354 | 5 | 313 | Pectin Lyase A [Aspergillus niger] |
|
| 8.65e-72 | 27 | 354 | 5 | 313 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 9.33e-90 | 11 | 370 | 10 | 352 | Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1 |
|
| 9.33e-90 | 11 | 370 | 10 | 352 | Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1 |
|
| 2.30e-86 | 6 | 354 | 3 | 332 | Probable pectin lyase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelA PE=3 SV=1 |
|
| 2.30e-86 | 6 | 354 | 3 | 332 | Probable pectin lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pelB PE=3 SV=1 |
|
| 3.35e-86 | 14 | 354 | 11 | 333 | Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000270 | 0.999738 | CS pos: 23-24. Pr: 0.9751 |