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CAZyme Information: HpaG811890:RNA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Hyaloperonospora arabidopsidis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis | |||||||||||
| CAZyme ID | HpaG811890:RNA-p1 | |||||||||||
| CAZy Family | GT43 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL3 | 40 | 228 | 1.3e-71 | 0.9742268041237113 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 397360 | Pectate_lyase | 2.13e-81 | 34 | 226 | 2 | 190 | Pectate lyase. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 7.35e-116 | 1 | 246 | 1 | 260 | |
| 2.10e-115 | 1 | 247 | 1 | 261 | |
| 5.98e-82 | 28 | 236 | 18 | 231 | |
| 5.56e-80 | 29 | 219 | 21 | 231 | |
| 5.56e-80 | 29 | 219 | 21 | 231 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.23e-24 | 51 | 192 | 11 | 147 | Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15] |
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| 1.77e-21 | 51 | 180 | 16 | 139 | The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725] |
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| 1.81e-21 | 51 | 180 | 17 | 140 | The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii],3T9G_B The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii] |
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| 1.60e-20 | 51 | 180 | 25 | 148 | C. bescii Family 3 pectate lyase double mutant K108A in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725],4Z03_B C. bescii Family 3 pectate lyase double mutant K108A in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725] |
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| 1.60e-20 | 51 | 180 | 25 | 148 | C. bescii Family 3 pectate lyase mutant E84A [Caldicellulosiruptor bescii DSM 6725],4Z05_B C. bescii Family 3 pectate lyase mutant E84A [Caldicellulosiruptor bescii DSM 6725] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5.97e-60 | 10 | 234 | 6 | 222 | Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1 |
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| 4.24e-54 | 37 | 234 | 40 | 234 | Probable pectate lyase E OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyE PE=3 SV=1 |
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| 4.24e-54 | 37 | 234 | 40 | 234 | Probable pectate lyase E OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyE PE=3 SV=1 |
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| 7.33e-54 | 37 | 215 | 43 | 220 | Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1 |
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| 8.46e-54 | 37 | 230 | 39 | 226 | Probable pectate lyase G OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyG PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000413 | 0.999573 | CS pos: 28-29. Pr: 0.8912 |