You are browsing environment: FUNGIDB
CAZyme Information: HpaG810253:RNA-p1
You are here: Home > Sequence: HpaG810253:RNA-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Hyaloperonospora arabidopsidis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis | |||||||||||
| CAZyme ID | HpaG810253:RNA-p1 | |||||||||||
| CAZy Family | GT2 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 15 | 158 | 1.5e-55 | 0.7379679144385026 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 1.36e-16 | 12 | 158 | 1 | 144 | Amb_all domain. |
| 226384 | PelB | 3.63e-07 | 8 | 154 | 81 | 225 | Pectate lyase [Carbohydrate transport and metabolism]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 6.11e-70 | 1 | 157 | 110 | 267 | |
| 2.42e-69 | 1 | 157 | 110 | 267 | |
| 3.66e-65 | 1 | 157 | 110 | 267 | |
| 5.17e-65 | 1 | 157 | 110 | 267 | |
| 1.49e-63 | 1 | 156 | 110 | 266 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5.68e-33 | 12 | 156 | 91 | 231 | Pectin Lyase B [Aspergillus niger] |
|
| 8.68e-30 | 13 | 156 | 92 | 231 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
|
| 1.69e-29 | 13 | 156 | 92 | 231 | Pectin Lyase A [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.76e-41 | 1 | 156 | 102 | 253 | Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1 |
|
| 2.76e-41 | 1 | 156 | 102 | 253 | Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1 |
|
| 2.65e-39 | 14 | 156 | 114 | 252 | Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1 |
|
| 2.65e-39 | 14 | 156 | 114 | 252 | Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2 |
|
| 4.28e-39 | 3 | 156 | 102 | 251 | Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000067 | 0.000000 |