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CAZyme Information: HpaG808343:RNA-p1

You are here: Home > Sequence: HpaG808343:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Hyaloperonospora arabidopsidis
Lineage Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis
CAZyme ID HpaG808343:RNA-p1
CAZy Family GH6
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
951 107191.88 6.8722
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_HarabidopsidisEmoy2 14267 559515 285 13982
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in HpaG808343:RNA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT96 517 647 4.3e-16 0.36156351791530944

CDD Domains      help

HpaG808343:RNA-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 38 948 1 915
5.38e-23 500 910 100 505
7.03e-12 516 883 1 289
1.17e-10 514 794 10 238
5.31e-09 509 674 27 175

PDB Hits      help

HpaG808343:RNA-p1 has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.68e-08 516 910 37 383
Peptidyl serine alpha-galactosyltransferase OS=Chlamydomonas reinhardtii OX=3055 GN=SGT1 PE=1 SV=1
1.89e-07 516 937 30 374
Peptidyl serine alpha-galactosyltransferase OS=Arabidopsis thaliana OX=3702 GN=SERGT1 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999995 0.000011

TMHMM  Annotations      help

There is no transmembrane helices in HpaG808343:RNA-p1.