CAZyme Information: HpaG807939:RNA-p1

Basic Information

• Species: Hyaloperonospora arabidopsidis
• Lineage: Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis
• CAZyme ID: HpaG807939:RNA-p1
• CAZy Family: GH5
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
768	HaraEmoy2_SC0071|CGC1	84862.94	7.1666

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_HarabidopsidisEmoy2	14267	559515	285	13982

• Gene Location: location=HaraEmoy2_SC0071:225087-227393(-)

Full Sequence      

MRFRLYVVYALAITWAVTIAFSIAAKKSAAVGITYPTKSGIKIWVDPATPDDRQSYVSSR
GREWDLVMSDEFNMPNRSFRPGDDHIWTSLEKPDGVNGALELYSHNMTSTRCDTDGTCYF
YIKSVDEVNVFHVYNMYTHPPGFVDVNFFYRSAMVQSWNKFCYQGGMVEARVQLPGVVAP
DSGNPDLANGKNEQVKTTKYYPTWPGIWMMGNLGRAIFSASTNRMWPFSYNKCEPDLFEP
SYQRISACNSNPGYGLNPNQGRGAPEIDVLEGGGALVSSSVQIGPGMPDEYRIMSIDYGK
DDPMCIFLFSCNSPGANHADVPTAVYKTRGHKTWYQGLRYSANNFCKPDAKQKQSYSTVA
ASMKSGFTKNACSKDTCPASNDVNGDLGLIDGKGKEYWGINSNGTCYPLFNVYLGAYLCD
PDNTFHKCTHPRDEAKTPKSNAMSSFNYQMDAISANWPVHLGAYMDYVTYQLEWVTGKKG
YIRWMLHGMPLYEVPAEAIWNVPQNANKTNPGKLMLEEPMYIIFNVALSSMWSANPPNPG
LACRGNGSDKVTNSICDAFPLYLKMDYIRLYQDLGDDLDDDNYMQLGCDPKSHPTKKWIE
GHLDEYQDGDNPHKEVAGKAFCMTNDDCTLGGGVGKKVLKTGKCVKGRCQCMYSVSWGGP
RCTTAISSSSAFNVNSTTSVSATTYGPAFGMSIGTAGIMVLLTFLMVMASAAKEKKAAAV
LKKQGKFAPAMSSRLNSNDVPAKLDESTSNDLGSARQIPQDNYSQNFV

Enzyme Prediction     

EC	-	-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH16	70	292	1.1e-60	0.6012269938650306

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397841	SKN1	1.21e-58	5	608	56	478	Beta-glucan synthesis-associated protein (SKN1). This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules.
185689	GH16_fungal_KRE6_glucanase	4.58e-47	66	572	1	295	Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
225182	BglS	1.09e-08	45	349	30	275	Beta-glucanase, GH16 family [Carbohydrate transport and metabolism].
185693	GH16_laminarinase_like	1.00e-06	466	571	159	235	Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
185693	GH16_laminarinase_like	9.56e-05	150	212	64	103	Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ28152.1|GH16	0.0	25	768	8	739
UIZ28149.1|GH16	0.0	32	768	26	754
UIZ27810.1|GH16	0.0	11	706	41	730
UIZ28150.1|GH16	0.0	68	718	1	648
UIZ28151.1|GH16	0.0	29	768	24	752

PDB Hits     

HpaG807939:RNA-p1 has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|P32486|KRE6_YEAST	1.27e-35	35	621	296	702	Beta-glucan synthesis-associated protein KRE6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KRE6 PE=1 SV=2
sp|P33336|SKN1_YEAST	1.17e-33	35	621	348	754	Beta-glucan synthesis-associated protein SKN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKN1 PE=1 SV=1
sp|P87024|SKN1_CANAX	3.13e-32	34	621	324	729	Beta-glucan synthesis-associated protein SKN1 OS=Candida albicans OX=5476 GN=SKN1 PE=2 SV=1
sp|P87023|KRE6_CANAX	4.07e-31	34	621	320	732	Beta-glucan synthesis-associated protein KRE6 OS=Candida albicans OX=5476 GN=KRE6 PE=2 SV=1
sp|O13941|YEPB_SCHPO	1.26e-27	45	618	219	615	Uncharacterized beta-glucan synthesis-associated protein C23H3.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC23H3.11c PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
0.826100	0.173914

TMHMM  Annotations     

Start	End
5	24
690	712