logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: HpaG807096:RNA-p1

You are here: Home > Sequence: HpaG807096:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Hyaloperonospora arabidopsidis
Lineage Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis
CAZyme ID HpaG807096:RNA-p1
CAZy Family GH37
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
251 HaraEmoy2_SC0059|CGC1 28362.80 5.5386
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_HarabidopsidisEmoy2 14267 559515 285 13982
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in HpaG807096:RNA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 102 246 2.9e-39 0.563265306122449

CDD Domains      help

HpaG807096:RNA-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.20e-96 64 251 15 201
6.08e-90 38 251 645 856
7.35e-81 106 251 2 146
2.78e-79 71 251 659 841
2.18e-52 86 245 12 169

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.62e-19 127 245 50 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

HpaG807096:RNA-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999759 0.000257

TMHMM  Annotations      help

There is no transmembrane helices in HpaG807096:RNA-p1.