CAZyme Information: HpaG804826:RNA-p1

Basic Information

• Species: Hyaloperonospora arabidopsidis
• Lineage: Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis
• CAZyme ID: HpaG804826:RNA-p1
• CAZy Family: PL3|PL3
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
529		61239.09	6.3317

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_HarabidopsidisEmoy2	14267	559515	285	13982

• Gene Location: location=HaraEmoy2_SC0032:99624-101213(+)

Full Sequence      

MAESSRPRFFLRVCVFLLLLIATLLQLVFFARLPQIRMHVAYCNATLESRALLAPLSTSV
ELTAPMKLLFQSLFVSPRELAVQQKEEEMRRNQHVTEGELRQTGRGQEEARQGVGEPFQG
EVLDETEAKRQQQLDSQMAVRESEELMKLRSGFFRQTQGQGHEAIGSKAAYCINVVTPSD
SPGVLLDFELYLNALPSSRPVYAYRGNGEQENERFSNGRREQLDMPMSVIDIYLERHPVD
KKYYANFHASKGKPIWVMQNIEFFDRHELENPTVGVMIVKNRIGLKKVLEYRYRHQLSYS
VFYTKHTSRDLYLPAIQRDWTSFLHLAGWSPFKNTRVILEAWALHPEWPQLILRVIKADL
CEWIEDQFGDKDSWRLQNVDYACGSLPAEEKDQLQNRIGLHLCPSETEGFGHYINEARSV
GALILTTNVPPMNELVDEKNGVLVGEPHAWWWQTKGDLFMPLAKVGIADIERGVEQIMLL
SMEERQRMGRRSRAKFLEDRAYFLNAMTALEESFCQDEIRIEKLQPFIY

Enzyme Prediction     

No EC number prediction in HpaG804826:RNA-p1.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
340831	GT4_PimA-like	8.61e-12	323	498	195	350	phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.
223515	RfaB	2.18e-09	323	499	202	360	Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis].
340816	Glycosyltransferase_GTB-type	4.71e-08	213	444	16	235	glycosyltransferase family 1 and related proteins with GTB topology. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
395425	Glycos_transf_1	8.80e-08	333	493	15	156	Glycosyl transferases group 1. Mutations in this domain of PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family.
340838	GT4_MtfB-like	2.74e-06	323	501	195	356	glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ29740.1|GT4	1.40e-257	66	529	1	468
CCA20002.1|GT4	1.47e-190	5	529	10	470
AGP82611.1|GT4	1.20e-31	276	513	110	325
UNK41845.1|GT4	2.56e-31	307	507	143	327
QNH11168.1|GT4	5.32e-31	308	502	133	309

PDB Hits     

HpaG804826:RNA-p1 has no PDB hit.

Swiss-Prot Hits     

HpaG804826:RNA-p1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000005	0.000004

TMHMM  Annotations     

Start	End
9	31