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CAZyme Information: HpaG803783:RNA-p1

You are here: Home > Sequence: HpaG803783:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Hyaloperonospora arabidopsidis
Lineage Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis
CAZyme ID HpaG803783:RNA-p1
CAZy Family GH16
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1018 107231.04 4.8495
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_HarabidopsidisEmoy2 14267 559515 285 13982
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 131 320 1.7e-78 0.9893048128342246

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 4.44e-38 132 319 2 186
Amb_all domain.
226384 PelB 7.16e-15 136 319 91 273
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 1.18e-11 135 319 23 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
273344 2A1904 7.59e-10 704 992 629 893
K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds]
273344 2A1904 2.73e-09 582 818 639 867
K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.13e-186 1 403 1 404
2.45e-148 25 403 189 561
1.76e-135 22 348 26 346
5.77e-115 29 301 22 296
7.05e-110 23 403 18 399

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.52e-77 28 363 3 324
Pectin Lyase B [Aspergillus niger]
3.76e-75 28 359 3 319
Pectin Lyase A [Aspergillus niger]
9.91e-75 28 359 3 319
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.42e-87 28 410 23 392
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
1.04e-86 28 403 23 382
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
1.04e-86 28 403 23 382
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
1.18e-82 12 362 8 342
Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1
1.13e-81 28 360 21 339
Probable pectin lyase A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=pelA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000286 0.999699 CS pos: 24-25. Pr: 0.9654

TMHMM  Annotations      help

There is no transmembrane helices in HpaG803783:RNA-p1.