logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: HpaG801972:RNA-p1

You are here: Home > Sequence: HpaG801972:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Hyaloperonospora arabidopsidis
Lineage Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis
CAZyme ID HpaG801972:RNA-p1
CAZy Family AA7
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
457 HaraEmoy2_SC0010|CGC3 51743.15 6.9816
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_HarabidopsidisEmoy2 14267 559515 285 13982
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 2.4.1.-:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT60 111 429 8.9e-47 0.990909090909091

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
371506 GlcNAc 2.97e-18 91 429 12 349
Glycosyltransferase (GlcNAc). GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1, a ubiquitous eukaryotic protein, in the cytoplasm.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
7.88e-222 1 457 1 458
1.86e-74 106 445 33 355
2.24e-52 109 457 85 412
4.09e-44 109 457 58 385
2.04e-20 108 457 66 397

PDB Hits      help

HpaG801972:RNA-p1 has no PDB hit.

Swiss-Prot Hits      help

HpaG801972:RNA-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999993 0.000014

TMHMM  Annotations      download full data without filtering help

Start End
35 57