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CAZyme Information: HpaG801682:RNA-p1

You are here: Home > Sequence: HpaG801682:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Hyaloperonospora arabidopsidis
Lineage Oomycota; NA; ; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis
CAZyme ID HpaG801682:RNA-p1
CAZy Family AA3
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
323 33883.35 4.5581
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_HarabidopsidisEmoy2 14267 559515 285 13982
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in HpaG801682:RNA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 11 259 2.2e-59 0.9346938775510204

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
183756 motB 0.002 214 310 318 415
flagellar motor protein MotB; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.80e-110 1 195 1 195
4.80e-110 1 195 1 195
1.37e-109 1 195 1 195
2.50e-109 1 195 19 213
5.03e-109 1 195 19 213

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.71e-12 23 194 1 174
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

HpaG801682:RNA-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000295 0.999699 CS pos: 22-23. Pr: 0.9750

TMHMM  Annotations      help

There is no transmembrane helices in HpaG801682:RNA-p1.