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CAZyme Information: H310_11417-t26_1-p1

You are here: Home > Sequence: H310_11417-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aphanomyces invadans
Lineage Oomycota; NA; ; Saprolegniaceae; Aphanomyces; Aphanomyces invadans
CAZyme ID H310_11417-t26_1-p1
CAZy Family GT31
CAZyme Description choline dehydrogenase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
582 KI913982|CGC1 63401.45 7.0162
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AinvadansNJM9701 15416 N/A 168 15248
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in H310_11417-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 13 558 4.2e-160 0.9911971830985915

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 0.0 9 582 2 555
choline dehydrogenase; Validated
225186 BetA 1.91e-169 6 566 1 542
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
274888 Rv0697 4.99e-82 13 558 1 487
dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.
366272 GMC_oxred_N 3.53e-50 83 314 15 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739 GMC_oxred_C 3.20e-42 415 553 2 143
GMC oxidoreductase. This domain found associated with pfam00732.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
7.71e-261 14 582 29 581
2.92e-202 5 563 12 556
5.41e-200 14 581 72 624
2.99e-198 9 581 21 578
1.60e-172 3 559 7 560

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.46e-78 9 563 4 566
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
9.04e-78 9 563 4 566
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
9.38e-78 9 563 20 582
Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]
1.26e-77 10 563 5 566
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
1.26e-77 9 563 4 566
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.52e-202 15 581 45 596
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
3.09e-198 15 581 48 599
Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
1.58e-194 14 581 42 594
Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
4.00e-170 14 582 6 554
Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum (strain SS9) OX=298386 GN=betA PE=3 SV=1
2.68e-163 14 582 6 554
Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000049 0.000005

TMHMM  Annotations      help

There is no transmembrane helices in H310_11417-t26_1-p1.