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CAZyme Information: H310_04416-t26_11-p1

You are here: Home > Sequence: H310_04416-t26_11-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aphanomyces invadans
Lineage Oomycota; NA; ; Saprolegniaceae; Aphanomyces; Aphanomyces invadans
CAZyme ID H310_04416-t26_11-p1
CAZy Family GT76
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1470 162523.51 6.6790
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AinvadansNJM9701 15416 N/A 168 15248
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in H310_04416-t26_11-p1.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
224557 HrpA 0.0 327 1143 25 711
HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis].
350740 DEXHc_DHX37 8.05e-112 351 560 1 191
DEXH-box helicase domain of DEAH-box helicase 37. DHX37 plays a role in the development of the human nervous system and has been linked to schizophrenia. It also negatively regulates poxviruses such as Myxoma virus. DEAH-box helicase 37 (DHX37) belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
182986 PRK11131 3.92e-105 350 980 72 555
ATP-dependent RNA helicase HrpA; Provisional
350675 DEXHc_RHA-like 5.41e-66 367 560 1 159
DEXH-box helicase domain of DEAD-like helicase RHA family proteins. The RNA helicase A (RHA) family includes RHA, also called DEAH-box helicase 9 (DHX9), DHX8, DHX15-16, DHX32-38, and many others. The RHA family belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
350178 SF2_C_RHA 1.25e-65 565 798 1 171
C-terminal helicase domain of the RNA helicase A (RHA) family helicases. The RNA helicase A (RHA) family includes RHA, also called DEAH-box helicase 9 (DHX9), DHX8, DHX15-16, DHX32-38, and many others. The RHA family members are DEAD-like helicases belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.19e-192 338 1282 1192 2112
6.85e-95 343 1138 430 1055
6.37e-39 1302 1458 7 164
6.37e-39 1302 1458 7 164
8.68e-39 1302 1458 7 164

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.03e-218 338 1298 60 973
Crystal structure of murine DHX37 in complex with RNA [Mus musculus],6O16_B Crystal structure of murine DHX37 in complex with RNA [Mus musculus]
1.92e-213 338 1299 239 1156
Chain NS, Probable ATP-dependent RNA helicase DHX37 [Homo sapiens]
1.50e-182 340 1112 4 778
Chain A, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae]
4.00e-180 336 1174 376 1219
Crystal structure of S. cerevisiae DEAH-box RNA helicase Dhr1, essential for small ribosomal subunit biogenesis [Saccharomyces cerevisiae S288C],6ZQD_JD Chain JD, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae S288C],6ZQE_JD Chain JD, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae S288C],6ZQF_JD Chain JD, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae S288C],6ZQG_JD Chain JD, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae S288C],7AJU_JD Chain JD, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae S288C],7D4I_RZ Chain RZ, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae S288C],7D5T_RZ Chain RZ, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae S288C],7D63_RZ Chain RZ, Probable ATP-dependent RNA helicase DHR1 [Saccharomyces cerevisiae S288C]
7.31e-108 343 1138 4 624
Chain A, Putative pre-mRNA splicing factor [Thermochaetoides thermophila DSM 1495],6I3O_B Chain B, Putative pre-mRNA splicing factor [Thermochaetoides thermophila DSM 1495],6I3P_A Chain A, Putative pre-mRNA splicing factor [Thermochaetoides thermophila DSM 1495],6I3P_B Chain B, Putative pre-mRNA splicing factor [Thermochaetoides thermophila DSM 1495],6I3P_C Chain C, Putative pre-mRNA splicing factor [Thermochaetoides thermophila DSM 1495],6I3P_D Chain D, Putative pre-mRNA splicing factor [Thermochaetoides thermophila DSM 1495]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.90e-213 338 1299 239 1156
Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens OX=9606 GN=DHX37 PE=1 SV=1
1.93e-193 336 1285 245 1184
Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster OX=7227 GN=kz PE=1 SV=1
1.78e-191 337 1286 225 1229
ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana OX=3702 GN=FAS4 PE=2 SV=1
9.70e-189 337 1195 384 1180
Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAPB1A10.06c PE=3 SV=1
2.06e-179 336 1174 376 1219
Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ECM16 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000065 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in H310_04416-t26_11-p1.