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CAZyme Information: FPRN_13320-t42_1-p1

You are here: Home > Sequence: FPRN_13320-t42_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Fusarium proliferatum
Lineage Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium proliferatum
CAZyme ID FPRN_13320-t42_1-p1
CAZy Family GH7|CBM1
CAZyme Description related to choline dehydrogenase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
640 FCQG01000026|CGC4 70243.42 4.9713
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_FproliferatumNRRL62905 15602 N/A 348 15254
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in FPRN_13320-t42_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 23 634 1e-93 0.9911971830985915

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 7.04e-51 38 636 20 533
choline dehydrogenase; Validated
225186 BetA 8.00e-49 37 639 21 538
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
398739 GMC_oxred_C 8.81e-32 499 630 5 143
GMC oxidoreductase. This domain found associated with pfam00732.
215420 PLN02785 4.46e-20 289 633 235 574
Protein HOTHEAD
366272 GMC_oxred_N 7.47e-17 124 394 19 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 640 1 640
0.0 1 640 1 640
0.0 1 640 1 640
0.0 1 640 1 640
0.0 1 640 1 640

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.41e-37 22 636 6 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
3.27e-37 22 636 6 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
3.27e-37 22 636 6 562
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
3.27e-37 22 636 6 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
3.54e-37 22 636 82 638
Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.31e-46 22 640 5 537
Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=betA PE=3 SV=1
2.84e-45 22 640 5 537
Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=betA PE=3 SV=1
7.19e-45 22 640 3 535
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=betA PE=3 SV=1
3.50e-44 22 640 5 537
Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=betA PE=3 SV=1
3.78e-44 22 636 41 575
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000846 0.999119 CS pos: 15-16. Pr: 0.9775

TMHMM  Annotations      help

There is no transmembrane helices in FPRN_13320-t42_1-p1.