CAZyme Information: FOZG_06002-t36_1-p1

Basic Information

• Species: Fusarium oxysporum
• Lineage: Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium oxysporum
• CAZyme ID: FOZG_06002-t36_1-p1
• CAZy Family: CE8
• CAZyme Description: galacturan 1,4-alpha-galacturonidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
464		51585.35	8.4519

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_FoxysporumFo47	18556	660027	365	18191

• Gene Location: location=JH717898.1:4265049-4266637(-)

Full Sequence      

MKVSSFFSTLSLFAGVLAGAIDLPAGVPRSIEEFRAKHPYELPVKRSHRKVYTIRHSKND
NDDVSSEFYKGLKKANKGGTLYLPKGQTFVIGKPLDLTFLNDIHVHLEGEIKFTNDTEYW
QKNAYKHPFQNSIMFWKWGGKNIKLYGKGVLNGNGQRWWNEFAGKEILDTTNAYLRPILF
YAQNATNLDIQGVHFKDSPCWTNFVVTSKDISFKDVICTARSTNATALPKNTDFFDSLNV
ENLNVERAWVDIGDDCFSPKSNATNVHVDTMYCNGTHGQSIGSLGQYKGEMSFVKDVVIE
NVWMLNGQHGARLKTWAGPDIGYGFIDNVTFRNFWGGNNEYTAFIDSCYFNINATTCAQY
PSRMNITNILFDNFTGYSSGKYGNAVAKLTCSTSKDAVCENIKFKDFNIKTPCGGDPVFL
CDGVKDIGVDCVSATSAAGKAALANKCVAPQASASPFKVRKFNG

Enzyme Prediction     

EC	3.2.1.67:3

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	74	425	4.9e-65	0.96

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
395231	Glyco_hydro_28	1.02e-37	80	425	8	316	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426	PLN02793	1.56e-23	83	421	90	406	Probable polygalacturonase
177865	PLN02218	9.56e-23	63	428	82	424	polygalacturonase ADPG
178580	PLN03003	1.11e-22	63	415	38	363	Probable polygalacturonase At3g15720
215540	PLN03010	1.96e-20	80	437	82	408	polygalacturonase

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BAE97076.1|GH28	0.0	1	464	1	464
BAE97054.1|GH28	0.0	1	464	1	464
BAE97077.1|GH28	0.0	1	464	1	464
QNM37665.1|GH28	0.0	1	464	1	464
BAE97075.1|GH28	0.0	1	464	1	464

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4C2L_A	1.31e-54	62	436	30	387	Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
1HG8_A	6.56e-17	62	376	1	303	Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]
1IA5_A	1.15e-15	92	376	35	293	Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]
2IQ7_A	5.52e-13	122	424	40	331	Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
1RMG_A	6.48e-12	254	421	197	350	Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|A1DAX2|PGXB_NEOFI	2.28e-171	6	436	10	436	Probable exopolygalacturonase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgxB PE=3 SV=1
sp|Q0C7H7|PGXB_ASPTN	2.66e-163	6	436	9	435	Probable exopolygalacturonase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgxB PE=3 SV=1
sp|Q2TW03|PGXB_ASPOR	2.16e-162	16	431	21	430	Probable exopolygalacturonase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgxB PE=3 SV=2
sp|B8NX60|PGXB_ASPFN	3.06e-162	16	431	21	430	Probable exopolygalacturonase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgxB PE=3 SV=1
sp|Q873X6|PGXB_EMENI	2.08e-161	5	433	20	438	Probable exopolygalacturonase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgxB PE=2 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.146387	0.853592	CS pos: 18-19. Pr: 0.7963

TMHMM  Annotations     

There is no transmembrane helices in FOZG_06002-t36_1-p1.