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CAZyme Information: FOYG_14028-t42_1-p1

You are here: Home > Sequence: FOYG_14028-t42_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Fusarium oxysporum
Lineage Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium oxysporum
CAZyme ID FOYG_14028-t42_1-p1
CAZy Family GH78
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
477 52747.47 5.3631
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_FoxysporumNRRL32931 17642 660029 362 17280
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in FOYG_14028-t42_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 179 442 6e-35 0.7476923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
227721 Pgu1 3.01e-05 214 303 244 338
Polygalacturonase [Carbohydrate transport and metabolism].
395231 Glyco_hydro_28 4.14e-05 210 405 87 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
178580 PLN03003 0.002 210 333 140 256
Probable polygalacturonase At3g15720
177865 PLN02218 0.007 210 441 194 410
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 477 1 477
1.59e-241 7 477 6 480
1.59e-241 7 477 6 480
1.59e-241 7 477 6 480
8.83e-208 1 473 1 485

PDB Hits      help

FOYG_14028-t42_1-p1 has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.20e-06 213 441 256 456
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
7.82e-06 221 406 300 470
Probable endopolygalacturonase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgaD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000034 0.000003

TMHMM  Annotations      help

There is no transmembrane helices in FOYG_14028-t42_1-p1.